Gm9726 (predicted gene 9726) - Rat Genome Database

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Gene: Gm9726 (predicted gene 9726) Mus musculus
Analyze
No known orthologs.
Symbol: Gm9726
Name: predicted gene 9726
RGD ID: 2295934
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 2610022K04Rik-ps; EG72159
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Lysmd1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391293,893,776 - 93,896,173 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1293,894,767 - 93,895,444 (-)EnsemblGRCm39 Ensembl
GRCm381293,927,002 - 93,929,399 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1293,927,993 - 93,928,670 (-)EnsemblGRCm38mm10GRCm38
MGSCv371295,165,312 - 95,167,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361294,327,530 - 94,329,755 (-)NCBIMGSCv36mm8
MGSCv361288,061,442 - 88,063,668 (-)NCBIMGSCv36mm8
Celera392,796,502 - 92,798,727 (-)NCBICelera
Cytogenetic Map12D3NCBI
cM Map1245.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm9726
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:372
Count of miRNA genes:276
Interacting mature miRNAs:293
Transcripts:ENSMUST00000180321
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
4142402Ccs1_mcolon cancer susceptibility 1 (mouse)Not determined90887422100023109Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse

Markers in Region
AI415311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381293,927,104 - 93,927,228UniSTSGRCm38
GRCm38395,139,296 - 95,139,420UniSTSGRCm38
MGSCv37394,943,218 - 94,943,342UniSTSGRCm37
MGSCv371295,165,264 - 95,165,388UniSTSGRCm37
Celera396,570,428 - 96,570,552UniSTS
Celera392,796,454 - 92,796,578UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map12D3UniSTS
D18044  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381293,927,004 - 93,927,107UniSTSGRCm38
GRCm38395,139,417 - 95,139,520UniSTSGRCm38
MGSCv371295,165,164 - 95,165,267UniSTSGRCm37
MGSCv37394,943,339 - 94,943,442UniSTSGRCm37
Celera396,570,549 - 96,570,652UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map12D3UniSTS
Whitehead_YAC12 UniSTS
UniSTS:234756  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381293,927,006 - 93,927,282UniSTSGRCm38
GRCm38395,139,242 - 95,139,518UniSTSGRCm38
MGSCv37394,943,164 - 94,943,440UniSTSGRCm37
MGSCv371295,165,166 - 95,165,442UniSTSGRCm37
Celera396,570,374 - 96,570,650UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map12D3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1293,894,767 - 93,895,444 (-)Ensembl
GRCm38.p6 Ensembl1293,927,993 - 93,928,670 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094935 Ensembl
MGD MGI:3648149 ENTREZGENE
NCBI Gene 72159 ENTREZGENE
PhenoGen Gm9726 PhenoGen