Trpc4<sup>Tn(sb-T2/Bart3)2.192Mcwi</sup> (transient receptor potential cation channel, subfamily C, member 4; transposon insertion 2.192, Medical College of Wisconsin)

Gene: Trpc4^{Tn(sb-T2/Bart3)2.192Mcwi} (transient receptor potential cation channel, subfamily C, member 4; transposon insertion 2.192, Medical College of Wisconsin) Rattus norvegicus

Analyze

Symbol:

Trpc4^{Tn(sb-T2/Bart3)2.192Mcwi}

Name:

transient receptor potential cation channel, subfamily C, member 4; transposon insertion 2.192, Medical College of Wisconsin

RGD ID:

2290060

Description:

this mutation consists of an insertion of a Sleeping Beauty transposable element gene trap construct into the 1^st intron of the Trpc4 gene
ASSOCIATED WITH Visceral Pain

Type:

allele of Trpc4

Previously known as:

Trpc4^[Tn(sb-T2/Bart3)2.192Mcwi]; Trpc4Tn(sb-T2/Bart3)2.192Mcwi

Is Marker For:

Strains: F344-Trpc4^{Tn(sb-T2/Bart3)2.192Mcwi}

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Cytogenetic Map	2		RGD

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Visceral Pain (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Generation of rat mutants using a coat color-tagged Sleeping Beauty transposon system.	Lu B, etal., Mamm Genome. 2007 May;18(5):338-46. Epub 2007 Jun 8.
2.	PhysGen Strains	PhysGen strains
3.	A rat knockout model implicates TRPC4 in visceral pain sensation.	Westlund KN, etal., Neuroscience. 2014 Mar 14;262:165-75. doi: 10.1016/j.neuroscience.2013.12.043. Epub 2014 Jan 3.

Genomics

Related Rat Strains

The following Strains have been annotated to Trpc4^{Tn(sb-T2/Bart3)2.192Mcwi}

F344-Trpc4^{Tn(sb-T2/Bart3)2.192Mcwi}

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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