Capza3 (capping actin protein of muscle Z-line subunit alpha 3) - Rat Genome Database

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Gene: Capza3 (capping actin protein of muscle Z-line subunit alpha 3) Rattus norvegicus
Analyze
Symbol: Capza3
Name: capping actin protein of muscle Z-line subunit alpha 3
RGD ID: 2271
Description: Predicted to enable actin filament binding activity. Involved in spermatid development. Located in acrosomal vesicle. Orthologous to human CAPZA3 (capping actin protein of muscle Z-line subunit alpha 3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cappa3; capping actin protein of muscle Z-line alpha subunit 3; capping protein (actin filament) muscle Z-line, alpha 3; capping protein alpha 3; capZ alpha-3; F-actin-capping protein subunit alpha-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84174,660,446 - 174,661,659 (+)NCBIGRCr8
mRatBN7.24172,929,273 - 172,930,486 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4172,928,887 - 172,932,535 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4179,224,278 - 179,225,491 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04175,008,452 - 175,009,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04173,628,999 - 173,630,212 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04174,181,644 - 174,182,857 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4174,181,644 - 174,182,856 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04238,434,589 - 238,435,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44177,163,025 - 177,164,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14177,408,170 - 177,409,361 (+)NCBI
Celera4161,481,071 - 161,482,284 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A missense mutation in the Capza3 gene and disruption of F-actin organization in spermatids of repro32 infertile male mice. Geyer CB, etal., Dev Biol. 2009 Jun 1;330(1):142-52. doi: 10.1016/j.ydbio.2009.03.020. Epub 2009 Mar 31.
3. Expression of a testis-specific putative actin-capping protein associated with the developing acrosome during rat spermiogenesis. Hurst S, etal., Mol Reprod Dev 1998 Jan;49(1):81-91.
4. Diagnosis of genetic defects through parallel assessment of PLCζ and CAPZA3 in infertile men with history of failed oocyte activation. Javadian-Elyaderani S, etal., Iran J Basic Med Sci. 2016 Mar;19(3):281-9.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18723693   PMID:21630459  


Genomics

Comparative Map Data
Capza3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84174,660,446 - 174,661,659 (+)NCBIGRCr8
mRatBN7.24172,929,273 - 172,930,486 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4172,928,887 - 172,932,535 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4179,224,278 - 179,225,491 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04175,008,452 - 175,009,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04173,628,999 - 173,630,212 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04174,181,644 - 174,182,857 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4174,181,644 - 174,182,856 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04238,434,589 - 238,435,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44177,163,025 - 177,164,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14177,408,170 - 177,409,361 (+)NCBI
Celera4161,481,071 - 161,482,284 (+)NCBICelera
Cytogenetic Map4q44NCBI
CAPZA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381218,738,119 - 18,739,188 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1218,738,119 - 18,739,188 (+)EnsemblGRCh38hg38GRCh38
GRCh371218,891,053 - 18,892,122 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,782,312 - 18,783,389 (+)NCBINCBI36Build 36hg18NCBI36
Build 341218,782,311 - 18,783,388NCBI
Celera1224,036,563 - 24,037,640 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1218,660,037 - 18,661,114 (+)NCBIHuRef
CHM1_11218,856,096 - 18,857,173 (+)NCBICHM1_1
T2T-CHM13v2.01218,614,034 - 18,615,103 (+)NCBIT2T-CHM13v2.0
Capza3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396139,987,283 - 139,988,563 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6139,986,978 - 139,988,504 (+)EnsemblGRCm39 Ensembl
GRCm386140,041,557 - 140,042,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6140,041,252 - 140,042,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv376139,990,046 - 139,991,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366140,003,963 - 140,005,184 (+)NCBIMGSCv36mm8
Celera6143,105,271 - 143,106,535 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map669.77NCBI
Capza3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541314,846,559 - 14,847,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541314,846,394 - 14,847,489 (+)NCBIChiLan1.0ChiLan1.0
CAPZA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21024,177,325 - 24,178,424 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,174,086 - 24,175,185 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01218,733,149 - 18,734,224 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11219,119,615 - 19,120,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1219,119,771 - 19,120,670 (+)Ensemblpanpan1.1panPan2
CAPZA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12728,362,103 - 28,363,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2728,362,120 - 28,363,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2718,088,061 - 18,102,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02728,693,734 - 28,694,821 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2728,693,751 - 28,694,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12728,540,480 - 28,541,567 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02728,533,041 - 28,534,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02717,795,950 - 17,809,899 (+)NCBIUU_Cfam_GSD_1.0
Capza3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494589,597,239 - 89,598,313 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365487,520,142 - 7,521,041 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365487,520,125 - 7,521,192 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPZA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl554,406,523 - 54,413,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1554,406,245 - 54,408,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2557,679,469 - 57,680,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPZA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11118,587,809 - 18,588,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1118,587,966 - 18,588,865 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606916,625,370 - 16,626,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Capza3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475219,802,336 - 19,803,235 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475219,802,322 - 19,803,401 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Capza3
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:31
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000011555
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 2 2 1 1 2
Below cutoff 1 1 8 5 6 5 1 3 3 2 7 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011555   ⟹   ENSRNOP00000011555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4174,181,644 - 174,182,856 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117932   ⟹   ENSRNOP00000089125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4172,928,887 - 172,932,535 (+)Ensembl
RefSeq Acc Id: NM_017164   ⟹   NP_058860
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84174,660,446 - 174,661,659 (+)NCBI
mRatBN7.24172,929,273 - 172,930,486 (+)NCBI
Rnor_6.04174,181,644 - 174,182,857 (+)NCBI
Rnor_5.04238,434,589 - 238,435,802 (+)NCBI
RGSC_v3.44177,163,025 - 177,164,238 (+)RGD
Celera4161,481,071 - 161,482,284 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_058860 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78870 (Get FASTA)   NCBI Sequence Viewer  
  CAA73137 (Get FASTA)   NCBI Sequence Viewer  
  EDM01562 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089125
  ENSRNOP00000089125.1
GenBank Protein Q9WUV6 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_058860   ⟸   NM_017164
- UniProtKB: Q9WUV6 (UniProtKB/Swiss-Prot),   Q6AYW7 (UniProtKB/TrEMBL),   A0A8I6A7I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011555   ⟸   ENSRNOT00000011555
RefSeq Acc Id: ENSRNOP00000089125   ⟸   ENSRNOT00000117932

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUV6-F1-model_v2 AlphaFold Q9WUV6 1-299 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693477
Promoter ID:EPDNEW_R4000
Type:initiation region
Name:Capza3_1
Description:capping actin protein of muscle Z-line alpha subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04174,181,630 - 174,181,690EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2271 AgrOrtholog
BioCyc Gene G2FUF-42542 BioCyc
Ensembl Genes ENSRNOG00000008727 Ensembl
  ENSRNOG00000067096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000117932 ENTREZGENE
  ENSRNOT00000117932.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1140.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133258 IMAGE-MGC_LOAD
InterPro CapZ_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CapZ_alpha/beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CapZ_alpha/beta_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CapZ_alpha_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-actin_cap_asu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29324 UniProtKB/TrEMBL
MGC_CLONE MGC:93539 IMAGE-MGC_LOAD
NCBI Gene 29324 ENTREZGENE
PANTHER F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam F-actin_cap_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Capza3 PhenoGen
PRINTS FACTINCAPA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE F_ACTIN_CAPPING_A_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_ACTIN_CAPPING_A_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008727 RatGTEx
  ENSRNOG00000067096 RatGTEx
Superfamily-SCOP SSF90096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A7I1 ENTREZGENE, UniProtKB/TrEMBL
  CAZA3_RAT UniProtKB/Swiss-Prot
  Q6AYW7 ENTREZGENE, UniProtKB/TrEMBL
  Q9WUV6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Capza3  capping actin protein of muscle Z-line subunit alpha 3  Capza3  capping actin protein of muscle Z-line alpha subunit 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Capza3  capping actin protein of muscle Z-line alpha subunit 3  Capza3  capping protein (actin filament) muscle Z-line, alpha 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Capza3  capping protein (actin filament) muscle Z-line, alpha 3  Cappa3  capping protein alpha 3  Symbol and Name updated 1299863 APPROVED
2002-06-10 Cappa3  capping protein alpha 3      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_function putative actin capping protein 69796
gene_process may have important role in determining the final shape of mature sperm heads 69796