KCTD9P2 (potassium channel tetramerization domain containing 9 pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: KCTD9P2 (potassium channel tetramerization domain containing 9 pseudogene 2) Homo sapiens
Analyze
Symbol: KCTD9P2
Name: potassium channel tetramerization domain containing 9 pseudogene 2
RGD ID: 1625839
HGNC Page HGNC:29274
Description: INTERACTS WITH resveratrol
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KCTD9L
Related Functional Gene: KCTD9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X105,405,513 - 105,408,882 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX105,405,647 - 105,407,039 (+)EnsemblGRCh38hg38GRCh38
GRCh37X104,650,184 - 104,653,553 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X104,536,974 - 104,540,226 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX105,124,763 - 105,128,131 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX94,275,488 - 94,278,856 (+)NCBIHuRef
CHM1_1X104,561,642 - 104,565,010 (+)NCBICHM1_1
T2T-CHM13v2.0X103,837,045 - 103,840,412 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

References
Additional References at PubMed
PMID:15772651   PMID:20029029  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:110
Interacting mature miRNAs:113
Transcripts:ENST00000512203
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DXS7627  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X104,650,980 - 104,651,064UniSTSGRCh37
GRCh37937,477,577 - 37,477,661UniSTSGRCh37
Build 36X104,537,636 - 104,537,720RGDNCBI36
CeleraX105,125,559 - 105,125,643RGD
Celera937,410,811 - 37,410,895UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic MapXq22UniSTS
HuRefX94,276,284 - 94,276,368UniSTS
HuRef937,429,626 - 37,429,710UniSTS
RH66133  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37831,076,016 - 31,076,131UniSTSGRCh37
GRCh37825,285,857 - 25,285,972UniSTSGRCh37
Build 36825,341,774 - 25,341,889RGDNCBI36
Celera824,246,734 - 24,246,849RGD
Celera830,034,692 - 30,034,807UniSTS
Cytogenetic MapXq22UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map8p12UniSTS
HuRefX94,278,427 - 94,278,542UniSTS
HuRef823,830,831 - 23,830,946UniSTS
HuRef11107,979,802 - 107,979,917UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 104 130 51 25 168 27 299 62 120 128 182 209 3 10 123 1
Below cutoff 1557 1751 811 315 690 195 3044 1501 1466 186 879 864 126 832 2039 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000512203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX105,405,647 - 105,407,039 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KCTD9P2 COSMIC
Ensembl Genes ENSG00000181819 Ensembl
GTEx ENSG00000181819 GTEx
HGNC ID HGNC:29274 ENTREZGENE
Human Proteome Map KCTD9P2 Human Proteome Map
NCBI Gene 643535 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-25 KCTD9P2  potassium channel tetramerization domain containing 9 pseudogene 2    potassium channel tetramerisation domain containing 9 pseudogene 2  Symbol and/or name change 5135510 APPROVED