Loricrin (loricrin cornified envelope precursor protein) - Rat Genome Database

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Gene: Loricrin (loricrin cornified envelope precursor protein) Mus musculus
Analyze
Symbol: Loricrin (Ensembl: Lor)
Name: loricrin cornified envelope precursor protein
RGD ID: 1624083
MGI Page MGI
Description: A structural constituent of cytoskeleton and structural constituent of skin epidermis. Predicted to be involved in keratinocyte differentiation. Predicted to act upstream of or within keratinization. Located in cytoplasmic side of plasma membrane. Is active in cornified envelope. Is expressed in several structures, including alimentary system; male reproductive system; sensory organ; skin; and thymus. Orthologous to human LORICRIN (loricrin cornified envelope precursor protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI036317; Lor; S77319
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39391,987,578 - 91,990,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl391,987,578 - 91,990,449 (-)EnsemblGRCm39 Ensembl
GRCm38392,080,271 - 92,083,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,080,271 - 92,083,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv37391,884,193 - 91,887,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36392,166,209 - 92,169,067 (-)NCBIMGSCv36mm8
Celera392,123,831 - 92,126,702 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1355480   PMID:2190691   PMID:7525178   PMID:7738016   PMID:7835895   PMID:8991098   PMID:9096311   PMID:9448282   PMID:9565599   PMID:9665399   PMID:9670011   PMID:9740238  
PMID:9808631   PMID:9822682   PMID:9847250   PMID:9882493   PMID:9888996   PMID:10227293   PMID:10227294   PMID:10431239   PMID:10441742   PMID:10571739   PMID:10631169   PMID:10984614  
PMID:11038185   PMID:11038186   PMID:11062007   PMID:11171335   PMID:11409899   PMID:11514592   PMID:11698679   PMID:11781569   PMID:11851882   PMID:12477932   PMID:12485431   PMID:12533516  
PMID:12702649   PMID:12736219   PMID:12805214   PMID:12853470   PMID:12923059   PMID:14517554   PMID:14530295   PMID:14597196   PMID:14638864   PMID:14673151   PMID:15068794   PMID:15199130  
PMID:15234001   PMID:15371305   PMID:15375216   PMID:15489334   PMID:15610523   PMID:15630473   PMID:15797384   PMID:15895417   PMID:15922673   PMID:16054035   PMID:16141072   PMID:16239341  
PMID:16418220   PMID:16462742   PMID:16481354   PMID:16510873   PMID:16565508   PMID:16628254   PMID:16837463   PMID:16901790   PMID:16914743   PMID:16949565   PMID:17002498   PMID:17041601  
PMID:17041603   PMID:17079689   PMID:17116754   PMID:17151017   PMID:17182288   PMID:17276340   PMID:17330888   PMID:17360773   PMID:17472964   PMID:17631878   PMID:17673451   PMID:18039792  
PMID:18043734   PMID:18166499   PMID:18166659   PMID:18268325   PMID:18356808   PMID:18367164   PMID:18369314   PMID:18410734   PMID:18434600   PMID:18480165   PMID:18593557   PMID:18802465  
PMID:18809908   PMID:19092943   PMID:19141668   PMID:19234195   PMID:19300453   PMID:19303854   PMID:19571816   PMID:19718027   PMID:19749746   PMID:19758319   PMID:19786578   PMID:19956733  
PMID:20106865   PMID:20335364   PMID:20424327   PMID:20930145   PMID:20962855   PMID:21067603   PMID:21068065   PMID:21084308   PMID:21093383   PMID:21127502   PMID:21136383   PMID:21191420  
PMID:21205794   PMID:21262812   PMID:21267068   PMID:21429982   PMID:21435444   PMID:21505443   PMID:21703447   PMID:21780252   PMID:21811233   PMID:21930775   PMID:21938009   PMID:21949412  
PMID:22258055   PMID:22274697   PMID:22277945   PMID:22366455   PMID:22371266   PMID:22505032   PMID:22511632   PMID:22585574   PMID:22682244   PMID:22796440   PMID:22832491   PMID:22935613  
PMID:22951731   PMID:22995554   PMID:23034632   PMID:23132931   PMID:23151848   PMID:23237955   PMID:23271346   PMID:23300445   PMID:23341029   PMID:23816618   PMID:23831572   PMID:23906066  
PMID:23974039   PMID:24043783   PMID:24075906   PMID:24194600   PMID:24198274   PMID:24222445   PMID:24346698   PMID:24492243   PMID:24725274   PMID:24735878   PMID:24982158   PMID:25038042  
PMID:25043184   PMID:25133425   PMID:25147951   PMID:25202828   PMID:25209981   PMID:25316000   PMID:25329657   PMID:25398052   PMID:25422376   PMID:25430793   PMID:25503409   PMID:25547114  
PMID:26023097   PMID:26045045   PMID:26203562   PMID:26268211   PMID:26371508   PMID:26376988   PMID:26438362   PMID:26644517   PMID:26711500   PMID:26765568   PMID:26967474   PMID:26975724  
PMID:26994968   PMID:27021405   PMID:27122169   PMID:27167730   PMID:27184845   PMID:27208706   PMID:27287879   PMID:27551807   PMID:27626380   PMID:27670610   PMID:27725204   PMID:27807348  
PMID:28017833   PMID:28205312   PMID:28369476   PMID:28374742   PMID:28507225   PMID:28643456   PMID:28650975   PMID:28688895   PMID:29019984   PMID:29044125   PMID:29317263   PMID:29490983  
PMID:29596938   PMID:29602800   PMID:29712925   PMID:29913133   PMID:29932941   PMID:30143634   PMID:30189017   PMID:30390666   PMID:30509557   PMID:30701202   PMID:30802441   PMID:30897080  
PMID:30923192   PMID:31220272   PMID:31356814   PMID:31410202   PMID:31492871   PMID:31519887   PMID:31562240   PMID:32239614   PMID:32296071   PMID:32467224   PMID:32582689   PMID:32758484  
PMID:32845239   PMID:32884021   PMID:33294854   PMID:33495473   PMID:34050161   PMID:34107258   PMID:34905516   PMID:35077450   PMID:35247391   PMID:36116371   PMID:36181694   PMID:36606449  
PMID:36630508   PMID:37115925   PMID:37479688   PMID:37660780   PMID:38113115  


Genomics

Comparative Map Data
Loricrin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39391,987,578 - 91,990,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl391,987,578 - 91,990,449 (-)EnsemblGRCm39 Ensembl
GRCm38392,080,271 - 92,083,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,080,271 - 92,083,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv37391,884,193 - 91,887,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36392,166,209 - 92,169,067 (-)NCBIMGSCv36mm8
Celera392,123,831 - 92,126,702 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
LORICRIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,259,687 - 153,262,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,259,687 - 153,262,124 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,232,163 - 153,234,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,498,803 - 151,501,224 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,046,475 - 150,047,671NCBI
Celera1126,303,436 - 126,305,857 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,595,566 - 124,597,999 (+)NCBIHuRef
CHM1_11154,627,959 - 154,630,380 (+)NCBICHM1_1
T2T-CHM13v2.01152,396,903 - 152,399,352 (+)NCBIT2T-CHM13v2.0
Loricrin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82180,253,674 - 180,256,572 (-)NCBIGRCr8
mRatBN7.22177,558,062 - 177,560,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2177,558,252 - 177,559,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2185,120,471 - 185,123,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02183,102,235 - 183,105,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02177,763,534 - 177,766,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02191,984,455 - 191,990,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2191,984,773 - 191,986,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02212,877,186 - 212,882,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42184,953,538 - 184,955,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2172,680,893 - 172,687,160 (+)NCBICelera
Cytogenetic Map2q34NCBI
Loricrin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955592167,139 - 169,638 (-)NCBIChiLan1.0ChiLan1.0
LORICRIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,580,323 - 96,581,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,315,995 - 96,317,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,607,506 - 128,608,808 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LORICRIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11761,994,297 - 61,995,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1761,460,176 - 61,463,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,144,507 - 63,147,606 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11761,893,634 - 61,896,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01761,944,715 - 61,947,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01762,703,311 - 62,706,427 (+)NCBIUU_Cfam_GSD_1.0
LORICRIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,304,070 - 96,305,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,303,835 - 96,308,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,206,034 - 105,209,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LORICRIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,494,570 - 10,497,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,966,739 - 9,968,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Loricrin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885675,955 - 677,391 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Loricrin
137 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:127
Interacting mature miRNAs:128
Transcripts:ENSMUST00000058150
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse

Markers in Region
AI036317  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38392,080,310 - 92,080,430UniSTSGRCm38
MGSCv37391,884,232 - 91,884,352UniSTSGRCm37
Celera392,123,870 - 92,123,990UniSTS
Cytogenetic Map3F1UniSTS
cM Map342.1UniSTS
Whitehead/MRC_RH31025.5UniSTS
Lor  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38392,079,106 - 92,080,115UniSTSGRCm38
MGSCv37391,883,028 - 91,884,037UniSTSGRCm37
Celera392,122,666 - 92,123,675UniSTS
Cytogenetic Map3F1UniSTS
cM Map342.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000058150   ⟹   ENSMUSP00000052128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl391,987,578 - 91,990,449 (-)Ensembl
GRCm38.p6 Ensembl392,080,271 - 92,083,142 (-)Ensembl
RefSeq Acc Id: NM_008508   ⟹   NP_032534
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39391,987,578 - 91,990,447 (-)NCBI
GRCm38392,080,271 - 92,083,142 (-)ENTREZGENE
MGSCv37391,884,193 - 91,887,064 (-)RGD
Celera392,123,831 - 92,126,702 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_032534 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39444 (Get FASTA)   NCBI Sequence Viewer  
  AAA82152 (Get FASTA)   NCBI Sequence Viewer  
  AAH58223 (Get FASTA)   NCBI Sequence Viewer  
  EDL15103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000052128
  ENSMUSP00000052128.7
GenBank Protein P18165 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_032534   ⟸   NM_008508
- UniProtKB: Q8R0I9 (UniProtKB/Swiss-Prot),   P18165 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000052128   ⟸   ENSMUST00000058150

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P18165-F1-model_v2 AlphaFold P18165 1-486 view protein structure

Promoters
RGD ID:6881376
Promoter ID:EPDNEW_M4139
Type:multiple initiation site
Name:Lor_1
Description:Mus musculus loricrin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38392,083,140 - 92,083,200EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96816 AgrOrtholog
Ensembl Genes ENSMUSG00000043165 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058150 ENTREZGENE
  ENSMUST00000058150.8 UniProtKB/Swiss-Prot
KEGG Report mmu:16939 UniProtKB/Swiss-Prot
MGD MGI:96816 ENTREZGENE
NCBI Gene 16939 ENTREZGENE
PhenoGen Loricrin PhenoGen
UniProt LORI_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8R0I9 ENTREZGENE
UniProt Secondary Q8R0I9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-25 Loricrin  loricrin cornified envelope precursor protein  Lor  loricrin cornified envelope precursor protein  Symbol and/or name updated 27372883 PROVISIONAL
2022-11-22 Lor  loricrin cornified envelope precursor protein  Lor  loricrin  Symbol and/or name change 5135510 APPROVED