Syngap1 (synaptic Ras GTPase activating protein 1 homolog (rat)) - Rat Genome Database

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Gene: Syngap1 (synaptic Ras GTPase activating protein 1 homolog (rat)) Mus musculus
Analyze
Symbol: Syngap1
Name: synaptic Ras GTPase activating protein 1 homolog (rat)
RGD ID: 1617329
MGI Page MGI
Description: Enables GTPase activator activity. Involved in maintenance of postsynaptic specialization structure and modulation of chemical synaptic transmission. Acts upstream of or within several processes, including Ras protein signal transduction; regulation of long-term neuronal synaptic plasticity; and visual learning. Located in dendritic shaft; membrane; and postsynaptic density. Is active in glutamatergic synapse. Is expressed in brain. Used to study schizophrenia. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 5. Orthologous to human SYNGAP1 (synaptic Ras GTPase activating protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm1963; neuronal RasGAP; ras GTPase-activating protein SynGAP; ras/Rap GTPase-activating protein SynGAP; Sy; synaptic Ras GTPase-activating protein 1; synaptic Ras-GAP 1; Syngap; SynGAP alpha2 isoform; SynGAP E alpha1 isoform
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,160,186 - 27,191,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,160,227 - 27,191,408 (+)EnsemblGRCm39 Ensembl
GRCm381726,941,212 - 26,972,434 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,941,253 - 26,972,434 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,078,397 - 27,107,590 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,669,086 - 26,698,234 (+)NCBIMGSCv36mm8
Celera1727,478,075 - 27,507,298 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal dendritic spine morphology  (IAGP)
abnormal discrimination learning  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal glutamate-mediated receptor currents  (IAGP)
abnormal hippocampus pyramidal cell morphology  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal miniature inhibitory postsynaptic currents  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal neuron morphology  (IAGP)
abnormal social/conspecific interaction behavior  (IAGP)
abnormal spatial learning  (IAGP)
abnormal spatial working memory  (IAGP)
abnormal suckling behavior  (IAGP)
audiogenic seizures  (IAGP)
bradykinesia  (IAGP)
decreased anxiety-related response  (IAGP)
decreased body size  (IAGP)
decreased brain size  (IAGP)
decreased prepulse inhibition  (IAGP)
enhanced AMPA-mediated synaptic currents  (IAGP)
enhanced long-term potentiation  (IAGP)
hyperactivity  (IAGP)
impaired cued conditioning behavior  (IAGP)
impaired synaptic plasticity  (IAGP)
increased horizontal stereotypic behavior  (IAGP)
increased locomotor activity  (IAGP)
increased miniature excitatory postsynaptic current amplitude  (IAGP)
increased miniature excitatory postsynaptic current frequency  (IAGP)
increased miniature inhibitory postsynaptic current amplitude  (IAGP)
increased miniature inhibitory postsynaptic current frequency  (IAGP)
increased neuron apoptosis  (IAGP)
increased startle reflex  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
reduced long-term potentiation  (IAGP)
social withdrawal  (IAGP)
tremors  (IAGP)
weakness  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. CaMKII regulation in information processing and storage. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8610433   PMID:8889548   PMID:10862698   PMID:12427827   PMID:12598599   PMID:14610273   PMID:15014045   PMID:15470153   PMID:15673435   PMID:15733080   PMID:15781580   PMID:16452659  
PMID:16537406   PMID:16959763   PMID:17114649   PMID:17904250   PMID:19074040   PMID:19145222   PMID:19824778   PMID:20105235   PMID:21267068   PMID:21525372   PMID:22692543   PMID:22700469  
PMID:23141534   PMID:23785156   PMID:24945774   PMID:25444158   PMID:25533468   PMID:26558778   PMID:27086544   PMID:27480238   PMID:27507650   PMID:27565345   PMID:27623146   PMID:27827368  
PMID:28634551   PMID:28671696   PMID:28706196   PMID:28864826   PMID:29518331   PMID:29787792   PMID:30104731   PMID:30455457   PMID:30562941   PMID:30894537   PMID:31025938   PMID:31323176  
PMID:31387938   PMID:31712124   PMID:31939740   PMID:32068252   PMID:32325033   PMID:32492419   PMID:33174316   PMID:33203791   PMID:33347690   PMID:33378226   PMID:33601422   PMID:34321999  
PMID:34404727   PMID:35394425   PMID:36417873   PMID:36604605   PMID:36917980   PMID:37072176   PMID:37293116   PMID:37669379   PMID:38422154  


Genomics

Comparative Map Data
Syngap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,160,186 - 27,191,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,160,227 - 27,191,408 (+)EnsemblGRCm39 Ensembl
GRCm381726,941,212 - 26,972,434 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,941,253 - 26,972,434 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,078,397 - 27,107,590 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,669,086 - 26,698,234 (+)NCBIMGSCv36mm8
Celera1727,478,075 - 27,507,298 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
SYNGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,418,167 - 33,453,689 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,419,661 - 33,453,689 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,387,842 - 33,421,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,495,825 - 33,529,444 (+)NCBINCBI36Build 36hg18NCBI36
Celera634,942,270 - 34,975,892 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef633,129,996 - 33,162,361 (+)NCBIHuRef
CHM1_1633,389,741 - 33,423,358 (+)NCBICHM1_1
T2T-CHM13v2.0633,239,529 - 33,275,052 (+)NCBIT2T-CHM13v2.0
Syngap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,028,226 - 5,058,519 (+)NCBIGRCr8
mRatBN7.2205,026,366 - 5,056,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,026,364 - 5,056,672 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,751,876 - 5,782,170 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,113,613 - 5,143,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,591,920 - 5,622,090 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,535,434 - 5,564,657 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,535,432 - 5,564,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,594,614 - 7,623,865 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,178,523 - 5,208,449 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,191,049 - 5,207,973 (+)NCBI
Celera206,608,780 - 6,637,810 (+)NCBICelera
Cytogenetic Map20p12NCBI
Syngap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,950,602 - 1,979,251 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,950,559 - 1,981,004 (+)NCBIChiLan1.0ChiLan1.0
SYNGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,905,069 - 47,938,759 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,772,255 - 43,805,902 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,999,408 - 33,033,067 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,111,285 - 34,144,490 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,110,652 - 34,144,490 (+)Ensemblpanpan1.1panPan2
SYNGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,829,274 - 2,862,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,829,306 - 2,851,432 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,910,079 - 2,943,658 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,162,881 - 3,194,514 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,162,894 - 3,194,511 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,828,036 - 2,861,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,909,144 - 2,942,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,007,257 - 3,040,837 (+)NCBIUU_Cfam_GSD_1.0
Syngap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,485,483 - 38,513,743 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,445,775 - 25,474,899 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,446,524 - 25,474,793 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,723,588 - 29,753,933 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,723,745 - 29,752,351 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,341,195 - 34,373,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,612,777 - 38,646,382 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,617,679 - 38,646,192 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,268,732 - 33,302,381 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syngap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,366,912 - 23,396,575 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,367,585 - 23,396,643 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syngap1
1197 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:337
Count of miRNA genes:211
Interacting mature miRNAs:223
Transcripts:ENSMUST00000081285, ENSMUST00000177932
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse

Markers in Region
AW557215  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381726,937,458 - 26,937,580UniSTSGRCm38
MGSCv371727,074,403 - 27,074,525UniSTSGRCm37
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17336.75UniSTS
AI326454  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381726,937,981 - 26,938,084UniSTSGRCm38
MGSCv371727,074,926 - 27,075,029UniSTSGRCm37
Celera1727,474,704 - 27,474,807UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map17B1UniSTS
Whitehead/MRC_RH17337.65UniSTS
D17Ertd455e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381726,937,641 - 26,937,881UniSTSGRCm38
MGSCv371727,074,586 - 27,074,826UniSTSGRCm37
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map17B1UniSTS
cM Map1715.15UniSTS
cM Map1714.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001281491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_385324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC144621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM939748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB525601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG600593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG600594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000081285   ⟹   ENSMUSP00000080038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,171,112 - 27,189,907 (+)Ensembl
GRCm38.p6 Ensembl1726,952,138 - 26,970,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177932   ⟹   ENSMUSP00000137587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,426 - 27,189,515 (+)Ensembl
GRCm38.p6 Ensembl1726,941,452 - 26,970,541 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193200   ⟹   ENSMUSP00000141245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,473 - 27,190,095 (+)Ensembl
GRCm38.p6 Ensembl1726,941,499 - 26,971,121 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194598   ⟹   ENSMUSP00000141686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,227 - 27,191,408 (+)Ensembl
GRCm38.p6 Ensembl1726,941,253 - 26,972,434 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,178,812 - 27,179,529 (+)Ensembl
GRCm38.p6 Ensembl1726,959,838 - 26,960,555 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201186   ⟹   ENSMUSP00000144410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,181,280 - 27,189,536 (+)Ensembl
GRCm38.p6 Ensembl1726,962,306 - 26,970,562 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201349   ⟹   ENSMUSP00000144666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,427 - 27,189,642 (+)Ensembl
GRCm38.p6 Ensembl1726,941,453 - 26,970,668 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201702   ⟹   ENSMUSP00000144248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,416 - 27,189,555 (+)Ensembl
GRCm38.p6 Ensembl1726,941,442 - 26,970,581 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202049   ⟹   ENSMUSP00000144509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,181,986 - 27,189,565 (+)Ensembl
GRCm38.p6 Ensembl1726,963,012 - 26,970,591 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202208   ⟹   ENSMUSP00000144414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,182,000 - 27,189,561 (+)Ensembl
GRCm38.p6 Ensembl1726,963,026 - 26,970,587 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202939   ⟹   ENSMUSP00000144403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,176,800 - 27,179,085 (+)Ensembl
GRCm38.p6 Ensembl1726,957,826 - 26,960,111 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228963   ⟹   ENSMUSP00000154838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,171,293 - 27,189,907 (+)Ensembl
GRCm38.p6 Ensembl1726,952,319 - 26,970,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229490   ⟹   ENSMUSP00000155085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,160,356 - 27,189,575 (+)Ensembl
GRCm38.p6 Ensembl1726,941,382 - 26,970,601 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231853   ⟹   ENSMUSP00000156340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1727,171,860 - 27,190,095 (+)Ensembl
GRCm38.p6 Ensembl1726,952,886 - 26,971,121 (+)Ensembl
RefSeq Acc Id: NM_001281491   ⟹   NP_001268420
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,224 - 27,191,408 (+)NCBI
GRCm381726,941,250 - 26,972,434 (+)NCBI
Celera1727,478,075 - 27,507,298 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371033   ⟹   NP_001357962
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,224 - 27,191,408 (+)NCBI
GRCm381726,941,250 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371034   ⟹   NP_001357963
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,224 - 27,191,408 (+)NCBI
GRCm381726,941,250 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001394027   ⟹   NP_001380956
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,167,908 - 27,191,408 (+)NCBI
RefSeq Acc Id: XM_006524235   ⟹   XP_006524298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,187,773 (+)NCBI
GRCm381726,941,256 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524236   ⟹   XP_006524299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,187,773 (+)NCBI
GRCm381726,941,256 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524237   ⟹   XP_006524300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,186 - 27,187,773 (+)NCBI
GRCm381726,941,212 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524238   ⟹   XP_006524301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,619 - 27,187,773 (+)NCBI
GRCm381726,941,599 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524239   ⟹   XP_006524302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,169,095 - 27,187,773 (+)NCBI
GRCm381726,950,120 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524240   ⟹   XP_006524303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524241   ⟹   XP_006524304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,383 - 27,187,773 (+)NCBI
GRCm381726,941,409 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524242   ⟹   XP_006524305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,167,897 - 27,187,773 (+)NCBI
GRCm381726,948,923 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524243   ⟹   XP_006524306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,187,773 (+)NCBI
GRCm381726,941,256 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524244   ⟹   XP_006524307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,167,368 - 27,187,773 (+)NCBI
GRCm381726,948,401 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524245   ⟹   XP_006524308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524247   ⟹   XP_006524310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,189,557 (+)NCBI
GRCm381726,941,256 - 26,970,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524248   ⟹   XP_006524311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,176,095 - 27,187,773 (+)NCBI
GRCm381726,957,155 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249783   ⟹   XP_030105643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,187,773 (+)NCBI
GRCm381726,941,256 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249784   ⟹   XP_030105644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249785   ⟹   XP_030105645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,167,898 - 27,187,773 (+)NCBI
GRCm381726,948,923 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249786   ⟹   XP_030105646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,165,746 - 27,187,773 (+)NCBI
GRCm381726,946,772 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249787   ⟹   XP_030105647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249788   ⟹   XP_030105648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,176,095 - 27,187,773 (+)NCBI
GRCm381726,957,155 - 26,968,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249790   ⟹   XP_030105650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,173,964 - 27,191,408 (+)NCBI
GRCm381726,954,990 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249791   ⟹   XP_030105651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,419 - 27,191,408 (+)NCBI
GRCm381726,941,445 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160597   ⟹   XP_036016490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,619 - 27,187,773 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160598   ⟹   XP_036016491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,168,027 - 27,187,773 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160599   ⟹   XP_036016492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,187,773 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160600   ⟹   XP_036016493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,167,369 - 27,187,773 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160601   ⟹   XP_036016494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,173,964 - 27,191,408 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003952115
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003952116
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,191,408 (+)NCBI
GRCm381726,941,256 - 26,972,434 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003952117
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,419 - 27,189,800 (+)NCBI
GRCm381726,941,445 - 26,970,826 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939524
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,176,095 - 27,189,664 (+)NCBI
Sequence:
RefSeq Acc Id: XR_385324
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391727,160,230 - 27,189,664 (+)NCBI
GRCm381726,941,256 - 26,970,583 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001268420 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357962 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357963 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380956 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524298 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524299 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524300 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524301 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524302 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524303 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524304 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524305 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524306 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524307 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524308 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524310 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524311 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105643 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105644 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105645 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105646 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105647 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105648 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105650 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105651 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016490 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016491 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016492 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016493 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016494 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AWC68051 (Get FASTA)   NCBI Sequence Viewer  
  AWC68052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000080038
  ENSMUSP00000080038.5
  ENSMUSP00000137587.2
  ENSMUSP00000141245
  ENSMUSP00000141245.3
  ENSMUSP00000141686
  ENSMUSP00000141686.2
  ENSMUSP00000144248.3
  ENSMUSP00000144403.2
  ENSMUSP00000144410.2
  ENSMUSP00000144414.2
  ENSMUSP00000144509.2
  ENSMUSP00000144666
  ENSMUSP00000144666.3
  ENSMUSP00000154838.2
  ENSMUSP00000155085.2
  ENSMUSP00000156340.2
GenBank Protein F6SEU4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001268420   ⟸   NM_001281491
- Peptide Label: isoform 1
- UniProtKB: F6SEU4 (UniProtKB/Swiss-Prot),   A0A2S1B6B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524303   ⟸   XM_006524240
- Peptide Label: isoform X7
- UniProtKB: A0A2S1B6B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524308   ⟸   XM_006524245
- Peptide Label: isoform X14
- UniProtKB: A0A0J9YVH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524310   ⟸   XM_006524247
- Peptide Label: isoform X14
- UniProtKB: A0A0J9YVH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524298   ⟸   XM_006524235
- Peptide Label: isoform X1
- UniProtKB: A0A2R8VHH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524306   ⟸   XM_006524243
- Peptide Label: isoform X12
- UniProtKB: J3QQ18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524299   ⟸   XM_006524236
- Peptide Label: isoform X2
- UniProtKB: A0A2R8VHH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524300   ⟸   XM_006524237
- Peptide Label: isoform X5
- UniProtKB: A0A0J9YUM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524304   ⟸   XM_006524241
- Peptide Label: isoform X8
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524301   ⟸   XM_006524238
- Peptide Label: isoform X4
- UniProtKB: A0A0A6YVS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524307   ⟸   XM_006524244
- Peptide Label: isoform X13
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524305   ⟸   XM_006524242
- Peptide Label: isoform X10
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524302   ⟸   XM_006524239
- Peptide Label: isoform X6
- UniProtKB: A0A2R8VH83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524311   ⟸   XM_006524248
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: NP_001357962   ⟸   NM_001371033
- Peptide Label: isoform 2
- UniProtKB: A0A2S1B6B8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001357963   ⟸   NM_001371034
- Peptide Label: isoform 3
- UniProtKB: A0A0J9YVH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105647   ⟸   XM_030249787
- Peptide Label: isoform X15
- UniProtKB: A0A0J9YVH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105644   ⟸   XM_030249784
- Peptide Label: isoform X9
- UniProtKB: A0A2S1B6B8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105643   ⟸   XM_030249783
- Peptide Label: isoform X3
- UniProtKB: A0A0J9YUM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105651   ⟸   XM_030249791
- Peptide Label: isoform X21
RefSeq Acc Id: XP_030105646   ⟸   XM_030249786
- Peptide Label: isoform X13
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105645   ⟸   XM_030249785
- Peptide Label: isoform X11
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105650   ⟸   XM_030249790
- Peptide Label: isoform X20
RefSeq Acc Id: XP_030105648   ⟸   XM_030249788
- Peptide Label: isoform X18
RefSeq Acc Id: ENSMUSP00000144414   ⟸   ENSMUST00000202208
RefSeq Acc Id: ENSMUSP00000144509   ⟸   ENSMUST00000202049
RefSeq Acc Id: ENSMUSP00000137587   ⟸   ENSMUST00000177932
RefSeq Acc Id: ENSMUSP00000144403   ⟸   ENSMUST00000202939
RefSeq Acc Id: ENSMUSP00000156340   ⟸   ENSMUST00000231853
RefSeq Acc Id: ENSMUSP00000080038   ⟸   ENSMUST00000081285
RefSeq Acc Id: ENSMUSP00000141245   ⟸   ENSMUST00000193200
RefSeq Acc Id: ENSMUSP00000144666   ⟸   ENSMUST00000201349
RefSeq Acc Id: ENSMUSP00000144410   ⟸   ENSMUST00000201186
RefSeq Acc Id: ENSMUSP00000144248   ⟸   ENSMUST00000201702
RefSeq Acc Id: ENSMUSP00000155085   ⟸   ENSMUST00000229490
RefSeq Acc Id: ENSMUSP00000154838   ⟸   ENSMUST00000228963
RefSeq Acc Id: ENSMUSP00000141686   ⟸   ENSMUST00000194598
RefSeq Acc Id: XP_036016492   ⟸   XM_036160599
- Peptide Label: isoform X14
- UniProtKB: A0A0J9YVH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016490   ⟸   XM_036160597
- Peptide Label: isoform X4
- UniProtKB: A0A0A6YVS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016493   ⟸   XM_036160600
- Peptide Label: isoform X16
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016491   ⟸   XM_036160598
- Peptide Label: isoform X13
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016494   ⟸   XM_036160601
- Peptide Label: isoform X19
RefSeq Acc Id: NP_001380956   ⟸   NM_001394027
- Peptide Label: isoform 4
- UniProtKB: A0A2S1B6F9 (UniProtKB/TrEMBL)
Protein Domains
C2   Disabled homolog 2-interacting protein C-terminal   PH   Ras-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6SEU4-F1-model_v2 AlphaFold F6SEU4 1-1340 view protein structure

Promoters
RGD ID:13675268
Promoter ID:EPDNEW_M21783
Type:initiation region
Name:Syngap1_1
Description:Mus musculus synaptic Ras GTPase activating protein 1 homolog, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381726,941,445 - 26,941,505EPDNEW
RGD ID:6828737
Promoter ID:MM_KWN:22707
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:XM_915205_SYNGAP1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361727,081,556 - 27,082,056 (+)MPROMDB
RGD ID:6828058
Promoter ID:MM_KWN:22708
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000081285
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361727,093,656 - 27,094,156 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3039785 AgrOrtholog
Ensembl Genes ENSMUSG00000067629 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081285 ENTREZGENE
  ENSMUST00000081285.9 UniProtKB/TrEMBL
  ENSMUST00000177932.7 UniProtKB/TrEMBL
  ENSMUST00000193200 ENTREZGENE
  ENSMUST00000193200.6 UniProtKB/TrEMBL
  ENSMUST00000194598 ENTREZGENE
  ENSMUST00000194598.6 UniProtKB/Swiss-Prot
  ENSMUST00000201186.4 UniProtKB/TrEMBL
  ENSMUST00000201349 ENTREZGENE
  ENSMUST00000201349.6 UniProtKB/TrEMBL
  ENSMUST00000201702.5 UniProtKB/TrEMBL
  ENSMUST00000202049.4 UniProtKB/TrEMBL
  ENSMUST00000202208.2 UniProtKB/TrEMBL
  ENSMUST00000202939.2 UniProtKB/TrEMBL
  ENSMUST00000228963.2 UniProtKB/TrEMBL
  ENSMUST00000229490.2 UniProtKB/TrEMBL
  ENSMUST00000231853.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3498 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RasGAP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RasGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SynGAP_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:240057 UniProtKB/Swiss-Prot
MGD MGI:3039785 ENTREZGENE
NCBI Gene 240057 ENTREZGENE
PANTHER PTHR10194 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS/RAP GTPASE-ACTIVATING PROTEIN SYNGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3498 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RasGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syngap1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RasGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUY7_MOUSE UniProtKB/TrEMBL
  A0A0J9YUZ2_MOUSE UniProtKB/TrEMBL
  A0A0J9YUZ5_MOUSE UniProtKB/TrEMBL
  A0A0J9YV63_MOUSE UniProtKB/TrEMBL
  A0A0J9YVH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A140T8K9_MOUSE UniProtKB/TrEMBL
  A0A2R8VH83 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8VHH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2S1B6B8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2S1B6F9 ENTREZGENE, UniProtKB/TrEMBL
  A0A338P799_MOUSE UniProtKB/TrEMBL
  F6SEU4 ENTREZGENE
  J3QQ18 ENTREZGENE, UniProtKB/TrEMBL
  SYGP1_MOUSE UniProtKB/Swiss-Prot