Krt83 (keratin 83) - Rat Genome Database

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Gene: Krt83 (keratin 83) Mus musculus
Analyze
Symbol: Krt83
Name: keratin 83
RGD ID: 1615965
MGI Page MGI
Description: Predicted to be a structural constituent of skin epidermis. Predicted to be involved in intermediate filament organization and keratinization. Predicted to be active in keratin filament. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis et progressiva 5 and monilethrix. Orthologous to several human genes including KRT83 (keratin 83).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5430421N21Rik; keratin type II; RIKEN cDNA 5430421N21 gene; type II hair keratin
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,383,011 - 101,389,393 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,383,011 - 101,389,393 (-)EnsemblGRCm39 Ensembl
GRCm3815101,485,130 - 101,491,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,485,130 - 101,491,512 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,315,561 - 101,321,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,303,909 - 101,310,414 (+)NCBIMGSCv36mm8
Celera15103,633,781 - 103,640,158 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1556.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1372089   PMID:1712823   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635  
PMID:29459677   PMID:30973865  


Genomics

Comparative Map Data
Krt83
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,383,011 - 101,389,393 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,383,011 - 101,389,393 (-)EnsemblGRCm39 Ensembl
GRCm3815101,485,130 - 101,491,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,485,130 - 101,491,512 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,315,561 - 101,321,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,303,909 - 101,310,414 (+)NCBIMGSCv36mm8
Celera15103,633,781 - 103,640,158 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1556.9NCBI
Krt83
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,482,911 - 134,489,600 (-)NCBIGRCr8
mRatBN7.27132,604,180 - 132,610,869 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,604,128 - 132,610,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,405,898 - 134,412,585 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,635,422 - 136,642,105 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,545,244 - 136,551,957 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,134,980 - 143,141,659 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,135,074 - 143,141,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,935,551 - 140,942,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,235,288 - 140,241,803 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,311,724 - 140,318,240 (-)NCBI
Celera7129,067,226 - 129,073,737 (-)NCBICelera
Cytogenetic Map7q36NCBI

Variants

.
Variants in Krt83
144 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:362
Count of miRNA genes:291
Interacting mature miRNAs:319
Transcripts:ENSMUST00000023718, ENSMUST00000081945, ENSMUST00000159029
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse

Markers in Region
AI325212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815101,485,300 - 101,485,396UniSTSGRCm38
MGSCv3715101,315,731 - 101,315,827UniSTSGRCm37
Celera15103,633,952 - 103,634,048UniSTS
Cytogenetic Map15F2UniSTS
cM Map1558.71UniSTS
Whitehead/MRC_RH15901.97UniSTS
UniSTS:224897  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815101,485,173 - 101,485,324UniSTSGRCm38
MGSCv3715101,315,604 - 101,315,755UniSTSGRCm37
Celera15103,633,825 - 103,633,976UniSTS
Cytogenetic Map15F2UniSTS
cM Map1558.71UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000023718   ⟹   ENSMUSP00000023718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,383,011 - 101,389,393 (-)Ensembl
GRCm38.p6 Ensembl15101,485,130 - 101,491,512 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,383,012 - 101,385,949 (-)Ensembl
GRCm38.p6 Ensembl15101,485,131 - 101,488,068 (-)Ensembl
RefSeq Acc Id: NM_001201323   ⟹   NP_001188252
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,383,011 - 101,389,393 (-)NCBI
GRCm3815101,485,130 - 101,491,512 (-)ENTREZGENE
Celera15103,633,781 - 103,640,164 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001188252 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39273 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000023718
  ENSMUSP00000023718.8
RefSeq Acc Id: NP_001188252   ⟸   NM_001201323
- UniProtKB: E9Q1Y9 (UniProtKB/TrEMBL),   Q61726 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000023718   ⟸   ENSMUST00000023718
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q1Y9-F1-model_v2 AlphaFold E9Q1Y9 1-479 view protein structure

Promoters
RGD ID:8685120
Promoter ID:EPDNEW_M20591
Type:single initiation site
Name:Krt83_1
Description:Mus musculus keratin 83 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815101,491,512 - 101,491,572EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3690448 AgrOrtholog
Ensembl Genes ENSMUSG00000067613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023718 ENTREZGENE
  ENSMUST00000023718.9 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_rod_dom UniProtKB/TrEMBL
  Intermediate_filament_CS UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
KEGG Report mmu:100126226 UniProtKB/TrEMBL
MGD MGI:3690448 ENTREZGENE
NCBI Gene 100126226 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN, TYPE II CUTICULAR HB1 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PhenoGen Krt83 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_2 UniProtKB/TrEMBL
  PS00226 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt E9Q1Y9 ENTREZGENE, UniProtKB/TrEMBL
  Q61726 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 Krt83  keratin 83  5430421N21Rik  RIKEN cDNA 5430421N21 gene  Symbol and/or name change 5135510 APPROVED