Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | keratin filament | is_active_in | IBA | PANTHER:PTN002897426 | 2290270 | MGI:6201960 and PMID:21873635 | GO_Central | MGI:6201960 and PMID:21873635 | |
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Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | keratin filament | is_active_in | IBA | PANTHER:PTN002897426 | 2290270 | MGI:6201960 and PMID:21873635 | GO_Central | MGI:6201960 and PMID:21873635 | |
# | Reference Title | Reference Citation |
1. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:1372089 | PMID:1712823 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:16141072 | PMID:16141073 | PMID:21677750 | PMID:21873635 |
PMID:29459677 | PMID:30973865 |
Krt83 (Mus musculus - house mouse) |
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Krt83 (Rattus norvegicus - Norway rat) |
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Variants in Krt83
144 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AI325212 |
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UniSTS:224897 |
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RefSeq Acc Id: | ENSMUST00000023718 ⟹ ENSMUSP00000023718 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000159029 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001201323 ⟹ NP_001188252 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001188252 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAA39273 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSMUSP00000023718 | ||
ENSMUSP00000023718.8 |
RefSeq Acc Id: | NP_001188252 ⟸ NM_001201323 |
- UniProtKB: | E9Q1Y9 (UniProtKB/TrEMBL), Q61726 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000023718 ⟸ ENSMUST00000023718 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-E9Q1Y9-F1-model_v2 | AlphaFold | E9Q1Y9 | 1-479 | view protein structure |
RGD ID: | 8685120 | ||||||||
Promoter ID: | EPDNEW_M20591 | ||||||||
Type: | single initiation site | ||||||||
Name: | Krt83_1 | ||||||||
Description: | Mus musculus keratin 83 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:3690448 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000067613 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000023718 | ENTREZGENE |
ENSMUST00000023718.9 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.5.170 | UniProtKB/TrEMBL |
Single helix bin | UniProtKB/TrEMBL | |
Vasodilator-stimulated phosphoprotein | UniProtKB/TrEMBL | |
InterPro | IF_rod_dom | UniProtKB/TrEMBL |
Intermediate_filament_CS | UniProtKB/TrEMBL | |
Keratin_2_head | UniProtKB/TrEMBL | |
Keratin_II | UniProtKB/TrEMBL | |
KEGG Report | mmu:100126226 | UniProtKB/TrEMBL |
MGD | MGI:3690448 | ENTREZGENE |
NCBI Gene | 100126226 | ENTREZGENE |
PANTHER | GATA-TYPE DOMAIN-CONTAINING PROTEIN | UniProtKB/TrEMBL |
KERATIN, TYPE II CUTICULAR HB1 | UniProtKB/TrEMBL | |
Pfam | Filament | UniProtKB/TrEMBL |
Keratin_2_head | UniProtKB/TrEMBL | |
PhenoGen | Krt83 | PhenoGen |
PRINTS | TYPE2KERATIN | UniProtKB/TrEMBL |
PROSITE | IF_ROD_2 | UniProtKB/TrEMBL |
PS00226 | UniProtKB/TrEMBL | |
SMART | Filament | UniProtKB/TrEMBL |
Superfamily-SCOP | Intermediate filament protein, coiled coil region | UniProtKB/TrEMBL |
UniProt | E9Q1Y9 | ENTREZGENE, UniProtKB/TrEMBL |
Q61726 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-06-07 | Krt83 | keratin 83 | 5430421N21Rik | RIKEN cDNA 5430421N21 gene | Symbol and/or name change | 5135510 | APPROVED |