REXO1L1P (REXO1 like 1, pseudogene) - Rat Genome Database

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Gene: REXO1L1P (REXO1 like 1, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: REXO1L1P
Name: REXO1 like 1, pseudogene
RGD ID: 1606670
HGNC Page HGNC:24660
Description: Predicted to enable exonuclease activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus.
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: antigen GOR homolog; exonuclease GOR; GOR; GOR antigen; REX1, RNA exonuclease 1 homolog-like 1, pseudogene; REXO1L1; RNA exonuclease 1 homolog-like 1
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: REXO1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38885,661,256 - 85,662,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,661,524 - 85,663,497 (-)EnsemblGRCh38hg38GRCh38
GRCh37886,573,485 - 86,574,639 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,755,947 - 86,762,978 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map8q21.2NCBI
HuRef882,050,293 - 82,050,931 (-)NCBIHuRef
CHM1_1886,620,926 - 86,627,957 (-)NCBICHM1_1
T2T-CHM13v2.0886,204,232 - 86,205,386 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
cadmium atom  (EXP)
caffeine  (EXP)
propanal  (EXP)
resveratrol  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1701012   PMID:9846365   PMID:11472404   PMID:12477932   PMID:17699833   PMID:21873635   PMID:25416956   PMID:30021884   PMID:33961781  


Genomics

Variants

.
Variants in REXO1L1P
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2072
Count of miRNA genes:1041
Interacting mature miRNAs:1229
Transcripts:ENST00000379010
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:386789  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.2UniSTS
SHGC-84602  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.2UniSTS
TNG Radiation Hybrid Map842884.0UniSTS
SHGC-83658  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.2UniSTS
TNG Radiation Hybrid Map842879.0UniSTS
D8S1502  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.2UniSTS
Whitehead-RH Map8521.6UniSTS
Whitehead-YAC Contig Map8 UniSTS
D6S1069  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q21.2UniSTS
Whitehead-RH Map8521.9UniSTS
Whitehead-YAC Contig Map8 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 1
Low 3 1 20 9 12 3
Below cutoff 63 105 40 15 128 14 137 56 67 27 99 52 3 14 98 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000379010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl885,656,442 - 85,663,039 (-)Ensembl
RefSeq Acc Id: ENST00000608646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl885,661,524 - 85,663,497 (-)Ensembl
RefSeq Acc Id: NM_172239   ⟹   NP_758439
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh37886,568,533 - 86,575,726 (-)NCBI
Build 36886,755,947 - 86,762,978 (-)NCBI Archive
HuRef882,050,293 - 82,050,931 (-)NCBI
RefSeq Acc Id: XM_005251207   ⟹   XP_005251264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh37886,568,533 - 86,575,726 (-)NCBI
RefSeq Acc Id: XR_428372
Type: NON-CODING
Position: No map positions available.
RefSeq Acc Id: XR_432331
Type: NON-CODING
Position: No map positions available.
RefSeq Acc Id: XR_929133
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38885,661,470 - 85,663,497 (-)NCBI
RefSeq Acc Id: XR_957178
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_1886,625,930 - 86,627,957 (-)NCBI
Protein Sequences
GenBank Protein Q8IX06 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_758439   ⟸   NM_172239
RefSeq Acc Id: XP_005251264   ⟸   XM_005251207

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IX06-F1-model_v2 AlphaFold Q8IX06 1-675 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24660 AgrOrtholog
COSMIC REXO1L1P COSMIC
Ensembl Genes ENSG00000205176 Ensembl
Gene3D-CATH 3.30.420.10 UniProtKB/Swiss-Prot
GTEx ENSG00000205176 GTEx
HGNC ID HGNC:24660 ENTREZGENE
Human Proteome Map REXO1L1P Human Proteome Map
InterPro EloA-BP1 UniProtKB/Swiss-Prot
  Exonuclease_RNaseT/DNA_pol3 UniProtKB/Swiss-Prot
  REX1-like_exo UniProtKB/Swiss-Prot
  REXO1/3/4-like UniProtKB/Swiss-Prot
  RNaseH-like_sf UniProtKB/Swiss-Prot
  RNaseH_sf UniProtKB/Swiss-Prot
NCBI Gene 254958 ENTREZGENE
PANTHER EXONUCLEASE GOR-RELATED UniProtKB/Swiss-Prot
  RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED UniProtKB/Swiss-Prot
Pfam EloA-BP1 UniProtKB/Swiss-Prot
SMART EXOIII UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53098 UniProtKB/Swiss-Prot
UniProt GOR_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6NK34 UniProtKB/Swiss-Prot
  O95107 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 REXO1L1P  REXO1 like 1, pseudogene    REX1, RNA exonuclease 1 homolog-like 1, pseudogene  Symbol and/or name change 5135510 APPROVED
2015-07-28 REXO1L1P  REX1, RNA exonuclease 1 homolog-like 1, pseudogene    REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene  Symbol and/or name change 5135510 APPROVED
2014-01-21 REXO1L1P  REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene  REXO1L1  REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1  Symbol and/or name change 5135510 APPROVED