SLC7A5P1 (solute carrier family 7 member 5 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SLC7A5P1 (solute carrier family 7 member 5 pseudogene 1) Homo sapiens
Analyze
Symbol: SLC7A5P1
Name: solute carrier family 7 member 5 pseudogene 1
RGD ID: 1603607
HGNC Page HGNC:29458
Description: Predicted to enable L-amino acid transmembrane transporter activity and neutral L-amino acid transmembrane transporter activity. Predicted to be involved in L-alpha-amino acid transmembrane transport. Predicted to be located in membrane.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: DC49; hLAT1-3TM; LAT1-3TM; LAT1-3TM protein 1; MLAS
Related Functional Gene: SLC7A5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381629,613,103 - 29,613,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1629,613,103 - 29,613,640 (-)EnsemblGRCh38hg38GRCh38
GRCh371629,624,424 - 29,625,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361629,531,925 - 29,532,539 (-)NCBINCBI36Build 36hg18NCBI36
Celera1673,170,970 - 73,171,584 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1673,643,017 - 73,643,631 (-)NCBIHuRef
CHM1_11630,636,252 - 30,636,866 (-)NCBICHM1_1
T2T-CHM13v2.01629,895,147 - 29,895,769 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10493829   PMID:12009310   PMID:12477932   PMID:14702039   PMID:15146197   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:397
Count of miRNA genes:353
Interacting mature miRNAs:392
Transcripts:ENST00000568957
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9 2 49 34 3 11 1 27 7 2
Low 1831 1281 698 177 1330 53 3194 1151 2842 136 1199 1014 136 835 1997 3
Below cutoff 539 1430 726 217 422 183 1030 872 813 164 184 501 34 336 725 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000568957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1629,613,103 - 29,613,640 (-)Ensembl
RefSeq Acc Id: NR_002593
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381629,613,103 - 29,613,717 (-)NCBI
GRCh371629,624,424 - 29,625,038 (-)RGD
Build 361629,531,925 - 29,532,539 (-)NCBI Archive
Celera1673,170,970 - 73,171,584 (+)RGD
CHM1_11630,840,202 - 30,840,816 (-)NCBI
RefSeq Acc Id: XM_011508598   ⟹   XP_011506900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_11630,589,377 - 30,636,861 (-)NCBI
Protein Sequences
GenBank Protein Q8MH63 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_011506900   ⟸   XM_011508598

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8MH63-F1-model_v2 AlphaFold Q8MH63 1-180 view protein structure

Promoters
RGD ID:6793451
Promoter ID:HG_KWN:23460
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   Lymphoblastoid,   NB4
Transcripts:ENST00000357918
Position:
Human AssemblyChrPosition (strand)Source
Build 361629,532,164 - 29,532,664 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC SLC7A5P1 COSMIC
Ensembl Genes ENSG00000260727 Ensembl, ENTREZGENE
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/Swiss-Prot
GTEx ENSG00000260727 GTEx
HGNC ID HGNC:29458 ENTREZGENE
Human Proteome Map SLC7A5P1 Human Proteome Map
InterPro AA/rel_permease1 UniProtKB/Swiss-Prot
NCBI Gene 81893 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot
  LARGE NEUTRAL AMINO ACIDS TRANSPORTER SMALL SUBUNIT 1 UniProtKB/Swiss-Prot
Pfam AA_permease_2 UniProtKB/Swiss-Prot
UniProt LAT1N_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC7A5P1  solute carrier family 7 member 5 pseudogene 1  SLC7A5P1  solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 SLC7A5P1  solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1  SLC7A5P1  solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 pseudogene 1  Symbol and/or name change 5135510 APPROVED