SERTAD3 (SERTA domain containing 3)

Advanced Search (OLGA)

Gene: SERTAD3 (SERTA domain containing 3) Homo sapiens

Analyze

Symbol:

SERTAD3

Name:

SERTA domain containing 3

RGD ID:

1603398

HGNC Page

HGNC:17931

Description:

Involved in regulation of DNA-templated transcription. Acts upstream of or within negative regulation of cell growth. Located in nucleus.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

RBT1; replication protein-binding trans-activator; RPA-binding trans-activator; SERTA domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,440,844 - 40,444,335 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,440,844 - 40,444,335 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,946,751 - 40,950,242 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,638,591 - 45,642,122 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	37,746,311 - 37,749,842 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,382,117 - 37,385,648 (-)	NCBI		HuRef
CHM1_1	19	40,946,420 - 40,949,954 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,261,506 - 43,264,994 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (IAGP)

congenital hypoplastic anemia (IAGP)

craniosynostosis (IAGP)

Diamond-Blackfan anemia (IAGP)

maple syrup urine disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (EXP)

(-)-epigallocatechin 3-gallate (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-palmitoylglycerol (EXP)

3-isobutyl-1-methyl-7H-xanthine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

alpha-phellandrene (EXP)

amiodarone (EXP)

amphetamine (ISO)

arsenite(3-) (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (EXP)

cadmium dichloride (EXP)

CGP 52608 (EXP)

chlorpyrifos (ISO)

chromium(6+) (EXP)

cisplatin (EXP)

copper(II) sulfate (EXP)

dexamethasone (EXP)

Dibutyl phosphate (EXP)

dibutyl phthalate (ISO)

erythromycin estolate (ISO)

folic acid (ISO)

hydrogen cyanide (ISO)

indometacin (EXP)

leflunomide (EXP)

methidathion (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (EXP)

potassium cyanide (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

silver atom (ISO)

silver(0) (ISO)

thioacetamide (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

triphenyl phosphate (EXP)

tungsten (ISO)

valdecoxib (ISO)

valproic acid (ISO)

vincristine (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell growth (IDA)

positive regulation of DNA-templated transcription (IBA,IEA,ISO)

regulation of DNA-templated transcription (IDA,IEA)

Cellular Component

nucleus (IBA,IDA,IEA)

Molecular Function

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Congenital hypoplastic anemia (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10982866	PMID:11331592	PMID:12477932	PMID:15174051	PMID:15489334	PMID:16098148	PMID:16189514	PMID:17260023	PMID:19060904	PMID:21873635	PMID:24722188	PMID:25416956
PMID:26871637	PMID:27107014	PMID:31515488	PMID:32296183	PMID:32393512	PMID:33147462

Genomics

Comparative Map Data

SERTAD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,440,844 - 40,444,335 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,440,844 - 40,444,335 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,946,751 - 40,950,242 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,638,591 - 45,642,122 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	37,746,311 - 37,749,842 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,382,117 - 37,385,648 (-)	NCBI		HuRef
CHM1_1	19	40,946,420 - 40,949,954 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,261,506 - 43,264,994 (-)	NCBI		T2T-CHM13v2.0

Sertad3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,173,265 - 27,176,789 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,173,193 - 27,176,789 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	27,473,840 - 27,477,364 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	27,473,768 - 27,477,364 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	28,258,859 - 28,262,383 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,182,600 - 27,186,124 (+)	NCBI		MGSCv36	mm8
Celera	7	22,056,212 - 22,059,736 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	15.91	NCBI

Sertad3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	91,891,141 - 91,894,861 (+)	NCBI		GRCr8
mRatBN7.2	1	82,763,535 - 82,767,271 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	82,763,149 - 82,769,001 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	88,166,294 - 88,169,999 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	96,653,376 - 96,657,105 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	89,922,152 - 89,925,857 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	84,280,945 - 84,284,681 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,280,945 - 84,284,663 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	85,498,045 - 85,501,781 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	82,553,826 - 82,557,545 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	77,178,327 - 77,182,046 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Sertad3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	837,686 - 841,561 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	837,686 - 841,561 (+)	NCBI	ChiLan1.0	ChiLan1.0

SERTAD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,703,959 - 46,707,817 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,574,604 - 48,578,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,489,388 - 37,493,147 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	46,000,426 - 46,004,278 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	46,001,062 - 46,001,652 (-)	Ensembl	panpan1.1		panPan2

SERTAD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,258,274 - 113,264,013 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,261,354 - 113,263,899 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,660,215 - 112,665,954 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,856,637 - 113,862,374 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,860,716 - 113,862,243 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,415,938 - 113,421,674 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,048,418 - 113,054,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,042,378 - 114,048,118 (+)	NCBI		UU_Cfam_GSD_1.0

Sertad3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,373,906 - 14,378,072 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936661	2,801,975 - 2,806,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERTAD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,709,065 - 48,713,086 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	48,709,064 - 48,713,113 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	44,457,026 - 44,462,490 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERTAD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,893,718 - 34,897,547 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,894,359 - 34,894,949 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	13,012,389 - 13,016,240 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sertad3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	425,065 - 429,338 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624925	425,469 - 429,875 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SERTAD3
11 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19q13.12-13.2(chr19:37319377-42738688)x3	copy number gain	See cases [RCV000050636]	Chr19:37319377..42738688 [GRCh38] Chr19:37810279..43242840 [GRCh37] Chr19:42502119..47934680 [NCBI36] Chr19:19q13.12-13.2	pathogenic
NM_013368.3(SERTAD3):c.478G>A (p.Glu160Lys)	single nucleotide variant	Malignant melanoma [RCV000072151]	Chr19:40441603 [GRCh38] Chr19:40947510 [GRCh37] Chr19:45639350 [NCBI36] Chr19:19q13.2	not provided
NM_013368.3(SERTAD3):c.388G>A (p.Asp130Asn)	single nucleotide variant	Malignant melanoma [RCV000072152]	Chr19:40441693 [GRCh38] Chr19:40947600 [GRCh37] Chr19:45639440 [NCBI36] Chr19:19q13.2	not provided
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3	copy number gain	See cases [RCV000133888]	Chr19:11227942..44626354 [GRCh38] Chr19:11338618..45129651 [GRCh37] Chr19:11199618..49821491 [NCBI36] Chr19:19p13.2-q13.31	pathogenic
GRCh37/hg19 19q13.12-13.2(chr19:37582250-41630908)x3	copy number gain	See cases [RCV000239839]	Chr19:37582250..41630908 [GRCh37] Chr19:19q13.12-13.2	pathogenic
NM_203344.3(SERTAD3):c.85T>C (p.Tyr29His)	single nucleotide variant	not specified [RCV004284257]	Chr19:40441996 [GRCh38] Chr19:40947903 [GRCh37] Chr19:19q13.2	uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)	copy number gain	See cases [RCV000512296]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
NM_203344.3(SERTAD3):c.161G>A (p.Arg54Lys)	single nucleotide variant	not specified [RCV004319103]	Chr19:40441920 [GRCh38] Chr19:40947827 [GRCh37] Chr19:19q13.2	uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3	copy number gain	See cases [RCV000511289]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic\|uncertain significance
GRCh37/hg19 19q13.2(chr19:40636400-41060616)x3	copy number gain	not provided [RCV000752683]	Chr19:40636400..41060616 [GRCh37] Chr19:19q13.2	benign
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3	copy number gain	not provided [RCV000752439]	Chr19:68029..59110290 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3	copy number gain	not provided [RCV000752444]	Chr19:260912..59097160 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3	copy number gain	not provided [RCV000845733]	Chr19:28271106..49213832 [GRCh37] Chr19:19q11-13.33	pathogenic
NC_000019.9:g.(?_39904727)_(42931301_?)dup	duplication	Diamond-Blackfan anemia [RCV003122291]\|MEGF8-related Carpenter syndrome [RCV003105286]\|Maple syrup urine disease [RCV003105287]\|TWIST1-related craniosynostosis [RCV003105285]	Chr19:39904727..42931301 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.57G>T (p.Trp19Cys)	single nucleotide variant	not specified [RCV004326466]	Chr19:40442024 [GRCh38] Chr19:40947931 [GRCh37] Chr19:19q13.2	uncertain significance
GRCh37/hg19 19p13.11-q13.2(chr19:19546923-41313229)x3	copy number gain	Specific learning disability [RCV001801194]	Chr19:19546923..41313229 [GRCh37] Chr19:19p13.11-q13.2	pathogenic
NC_000019.9:g.(?_40882496)_(41135455_?)dup	duplication	not provided [RCV003116579]	Chr19:40882496..41135455 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.547T>G (p.Trp183Gly)	single nucleotide variant	not specified [RCV004092656]	Chr19:40441534 [GRCh38] Chr19:40947441 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.128G>A (p.Arg43His)	single nucleotide variant	not specified [RCV004093254]	Chr19:40441953 [GRCh38] Chr19:40947860 [GRCh37] Chr19:19q13.2	likely benign
NM_203344.3(SERTAD3):c.494G>A (p.Arg165Gln)	single nucleotide variant	not specified [RCV004162213]	Chr19:40441587 [GRCh38] Chr19:40947494 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.127C>A (p.Arg43Ser)	single nucleotide variant	not specified [RCV004094127]	Chr19:40441954 [GRCh38] Chr19:40947861 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.419G>A (p.Arg140Gln)	single nucleotide variant	not specified [RCV004077353]	Chr19:40441662 [GRCh38] Chr19:40947569 [GRCh37] Chr19:19q13.2	uncertain significance
GRCh37/hg19 19q11-13.2(chr19:28271146-41508851)x3	copy number gain	not specified [RCV003986115]	Chr19:28271146..41508851 [GRCh37] Chr19:19q11-13.2	pathogenic
NM_203344.3(SERTAD3):c.209G>A (p.Arg70His)	single nucleotide variant	not specified [RCV004455407]	Chr19:40441872 [GRCh38] Chr19:40947779 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.332C>A (p.Pro111His)	single nucleotide variant	not specified [RCV004455408]	Chr19:40441749 [GRCh38] Chr19:40947656 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.565A>G (p.Ile189Val)	single nucleotide variant	not specified [RCV004455409]	Chr19:40441516 [GRCh38] Chr19:40947423 [GRCh37] Chr19:19q13.2	uncertain significance
NM_203344.3(SERTAD3):c.66T>A (p.Ser22Arg)	single nucleotide variant	not specified [RCV004666034]	Chr19:40442015 [GRCh38] Chr19:40947922 [GRCh37] Chr19:19q13.2	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1214
Count of miRNA genes:	634
Interacting mature miRNAs:	722
Transcripts:	ENST00000322354, ENST00000392028, ENST00000596456, ENST00000599706, ENST00000601217
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1559110	SCL22_H	Serum cholesterol level QTL 22 (human)	3.59	0.000241	Lipid level	LDL cholesterol	19	31907594	57907594	Human
407038582	GWAS687558_H	mean reticulocyte volume QTL GWAS687558 (human)		1e-11	reticulocyte morphology trait (VT:0002424)	mean corpuscular volume (CMO:0000038)	19	40442161	40442162	Human
1331657	COPD9_H	Chronic obstructive pulmonary disease QTL 9 (human)	1.94		Chronic airflow obstruction	post-bronchodilator FEV1	19	31021760	57021760	Human

Markers in Region

RH92950

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	40,946,866 - 40,947,042	UniSTS	GRCh37
Build 36	19	45,638,706 - 45,638,882	RGD	NCBI36
Celera	19	37,746,430 - 37,746,606	RGD
Cytogenetic Map	19	q13.2	UniSTS
HuRef	19	37,382,236 - 37,382,412	UniSTS
GeneMap99-GB4 RH Map	19	235.07	UniSTS

PMC110737P1

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	40,946,860 - 40,947,371	UniSTS	GRCh37
Build 36	19	45,638,700 - 45,639,211	RGD	NCBI36
Celera	19	37,746,424 - 37,746,935	RGD
Cytogenetic Map	19	q13.2	UniSTS
HuRef	19	37,382,230 - 37,382,741	UniSTS

SERTAD3_3582

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	40,946,635 - 40,947,403	UniSTS	GRCh37
Build 36	19	45,638,475 - 45,639,243	RGD	NCBI36
Celera	19	37,746,198 - 37,746,963	RGD
HuRef	19	37,382,004 - 37,382,769	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1951	465	2270	7306	6472	53	3734	1	852	1744	1617	175	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_203344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005258832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006723179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047438716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047438717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047438718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054320771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054320772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054320773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054320774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC010271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF192529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK074604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW242302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC014061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC050643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ783944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000322354 ⟹ ENSP00000325414

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	40,440,844 - 40,444,335 (-)	Ensembl

Ensembl Acc Id:

ENST00000392028 ⟹ ENSP00000375882

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	40,440,844 - 40,442,598 (-)	Ensembl

Ensembl Acc Id:

ENST00000596456 ⟹ ENSP00000472999

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	40,441,806 - 40,444,275 (-)	Ensembl

Ensembl Acc Id:

ENST00000599706 ⟹ ENSP00000469245

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	40,441,548 - 40,444,062 (-)	Ensembl

Ensembl Acc Id:

ENST00000601217

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	40,440,847 - 40,441,385 (-)	Ensembl

RefSeq Acc Id:

NM_013368 ⟹ NP_037500

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,442,598 (-)	NCBI
GRCh37	19	40,946,748 - 40,950,282 (-)	RGD
Build 36	19	45,638,591 - 45,640,345 (-)	NCBI Archive
Celera	19	37,746,311 - 37,749,842 (-)	RGD
HuRef	19	37,382,117 - 37,385,648 (-)	RGD
CHM1_1	19	40,946,420 - 40,948,177 (-)	NCBI
T2T-CHM13v2.0	19	43,261,506 - 43,263,257 (-)	NCBI

Sequence:

show sequence

AGGAAACTGAGGCCCTGAGAATTGACTCATTCAGATCACTTCCCATGATCACGCAGCTGAGCAG
TTTCCAATACAGAATTCAGATTTGGGGTTCCCTACTTCCAATCCAGGTCTCTGTGCTCCACACT
TGTCTTTCGTGCTCCATGTTTGAAGAAATTAATATTGTGGAAGAACAGTTTTAAGGCTTAGAGG
AACTTGAGTTAGGATCCGTACTTGGCAGATGAGGAAATTGATTCTCATGGATGTAAATTCACTG
TTTGAGGCCACAACAGGGCATCATGGTGGGAGGCTTGAAGAGGAAACACTCTGATTTGGAAGAG
GAGGAGGAGAGGTGGGAGTGGAGTCCAGCAGGCCTTCAGAGCTACCAGCAAGCCCTGCTCCGCA
TCTCCCTAGACAAAGTCCAGCGCAGCCTGGGCCCCCGAGCACCCAGCCTCCGCAGGCATGTCCT
CATCCATAACACCCTCCAACAGCTGCAGGCTGCACTTCGCCTGGCTCCCGCCCCTGCCCTGCCC
CCCGAGCCCCTCTTCCTGGGCGAGGAGGATTTCTCCCTGTCAGCCACCATTGGCTCTATCCTCA
GGGAGCTGGACACCTCCATGGATGGGACTGAGCCCCCTCAGAATCCAGTGACTCCCCTTGGCCT
CCAGAATGAAGTGCCACCCCAGCCTGATCCAGTCTTCTTAGAAGCTCTGAGCTCCCGGTACTTG
GGGGACTCTGGCCTGGATGACTTCTTTCTGGACATTGACACATCTGCGGTAGAAAAGGAGCCTG
CACGGGCCCCACCAGAGCCTCCTCACAACCTCTTCTGTGCCCCAGGTTCTTGGGAGTGGAATGA
ACTGGATCACATCATGGAAATCATTCTGGGGTCCTAAAACTGTGATAGAGGGGATCGATCCTTC
CTCATGTCATCTTCGGTGGCCTGGATCCCTGAATGCAACTCTGGGTGTGTGTTTTTGTGGGGGC
TCGAAGCAGTGACTATGGCCTCCTTTGTTCCCATTTCAGGGTTCCACAAACTGTCTTGCATGTG
TGTGTGTGTCTGGTTACCCCGACCTTCTGTGAAGGTGGGTCTTCCTGAATTAATTTATCTATTC
CAAATGCCTTAACGAGACTCTGTTTCTGGGAGTCTGATTTTCCACTTACACATTTCTTCCACCT
TTCCTGCTAGTTCCCACTCCCCTGTGACCACTGGGGCCTCAGGGAAGATAAAGAAAGCTGGGCC
TGTCGAAGGATGACAGGGATGTGCTGCCAGGTTGCTATAGAAACCCAGGCTCTGCCTCTTGCAC
CTTGAGGGGGTGGGAGGGGCTGGTGTCCTCCCTCCAGGCTGAACCCCACTTCCTCGGCAGGACC
CCAGTCTCAGCAGCCTCCTGATTTCATAACCAGGCCGGACCACGTGCAATAGGGTGGAAACCAA
ACTGCTCCATGCCGGGTTATTTAAAAGAAAGGCAGAGTTTGTGGTGGCTTTTTTTTTTTTTTTT
GGATTGTTTGTAATTTTTTTAAATAAAAGTATTTTGGAAGGAG

hide sequence

RefSeq Acc Id:

NM_203344 ⟹ NP_976219

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,444,335 (-)	NCBI
GRCh37	19	40,946,748 - 40,950,282 (-)	RGD
Build 36	19	45,638,591 - 45,642,122 (-)	NCBI Archive
Celera	19	37,746,311 - 37,749,842 (-)	RGD
HuRef	19	37,382,117 - 37,385,648 (-)	RGD
CHM1_1	19	40,946,420 - 40,949,954 (-)	NCBI
T2T-CHM13v2.0	19	43,261,506 - 43,264,994 (-)	NCBI

Sequence:

show sequence

AGACGGAGAGGCCCCGCCGAGGTGAGCGAGGCTCCAACCGGTCACTGGTGGGTCCTGGCACTGG
CGGGTCGCAACGCTGTGGGCGTTCCAGGAGGTGGTCGTGGCGAACCTGGCAGCTGCGGGCATCA
TGGTGGGAGGCTTGAAGAGGAAACACTCTGATTTGGAAGAGGAGGAGGAGAGGTGGGAGTGGAG
TCCAGCAGGCCTTCAGAGCTACCAGCAAGCCCTGCTCCGCATCTCCCTAGACAAAGTCCAGCGC
AGCCTGGGCCCCCGAGCACCCAGCCTCCGCAGGCATGTCCTCATCCATAACACCCTCCAACAGC
TGCAGGCTGCACTTCGCCTGGCTCCCGCCCCTGCCCTGCCCCCCGAGCCCCTCTTCCTGGGCGA
GGAGGATTTCTCCCTGTCAGCCACCATTGGCTCTATCCTCAGGGAGCTGGACACCTCCATGGAT
GGGACTGAGCCCCCTCAGAATCCAGTGACTCCCCTTGGCCTCCAGAATGAAGTGCCACCCCAGC
CTGATCCAGTCTTCTTAGAAGCTCTGAGCTCCCGGTACTTGGGGGACTCTGGCCTGGATGACTT
CTTTCTGGACATTGACACATCTGCGGTAGAAAAGGAGCCTGCACGGGCCCCACCAGAGCCTCCT
CACAACCTCTTCTGTGCCCCAGGTTCTTGGGAGTGGAATGAACTGGATCACATCATGGAAATCA
TTCTGGGGTCCTAAAACTGTGATAGAGGGGATCGATCCTTCCTCATGTCATCTTCGGTGGCCTG
GATCCCTGAATGCAACTCTGGGTGTGTGTTTTTGTGGGGGCTCGAAGCAGTGACTATGGCCTCC
TTTGTTCCCATTTCAGGGTTCCACAAACTGTCTTGCATGTGTGTGTGTGTCTGGTTACCCCGAC
CTTCTGTGAAGGTGGGTCTTCCTGAATTAATTTATCTATTCCAAATGCCTTAACGAGACTCTGT
TTCTGGGAGTCTGATTTTCCACTTACACATTTCTTCCACCTTTCCTGCTAGTTCCCACTCCCCT
GTGACCACTGGGGCCTCAGGGAAGATAAAGAAAGCTGGGCCTGTCGAAGGATGACAGGGATGTG
CTGCCAGGTTGCTATAGAAACCCAGGCTCTGCCTCTTGCACCTTGAGGGGGTGGGAGGGGCTGG
TGTCCTCCCTCCAGGCTGAACCCCACTTCCTCGGCAGGACCCCAGTCTCAGCAGCCTCCTGATT
TCATAACCAGGCCGGACCACGTGCAATAGGGTGGAAACCAAACTGCTCCATGCCGGGTTATTTA
AAAGAAAGGCAGAGTTTGTGGTGGCTTTTTTTTTTTTTTTTGGATTGTTTGTAATTTTTTTAAA
TAAAAGTATTTTGGAAGGAG

hide sequence

RefSeq Acc Id:

XM_006723179 ⟹ XP_006723242

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,444,077 (-)	NCBI

Sequence:

show sequence

GGGACCTGAGACTGAGTTCAAGACCCAGGAGGGGAGGCGAGGTTGTTGGGGCAGTATTTTCAAG
TGGAGGGAGTTTGAAGCTGGGACGTTGGGCTTTTGGAGAAGCGAGAGAACAGAGGGGAGGAACT
TTTGAGACAGGGAACCTGGAGATTCGATTCCACTTGGGTCTTCCGGACGGGTTGAATTCGGGGC
TTTATCGTGTTCTGGAAAAGGTGTGAGAGGGCATCATGGTGGGAGGCTTGAAGAGGAAACACTC
TGATTTGGAAGAGGAGGAGGAGAGGTGGGAGTGGAGTCCAGCAGGCCTTCAGAGCTACCAGCAA
GCCCTGCTCCGCATCTCCCTAGACAAAGTCCAGCGCAGCCTGGGCCCCCGAGCACCCAGCCTCC
GCAGGCATGTCCTCATCCATAACACCCTCCAACAGCTGCAGGCTGCACTTCGCCTGGCTCCCGC
CCCTGCCCTGCCCCCCGAGCCCCTCTTCCTGGGCGAGGAGGATTTCTCCCTGTCAGCCACCATT
GGCTCTATCCTCAGGGAGCTGGACACCTCCATGGATGGGACTGAGCCCCCTCAGAATCCAGTGA
CTCCCCTTGGCCTCCAGAATGAAGTGCCACCCCAGCCTGATCCAGTCTTCTTAGAAGCTCTGAG
CTCCCGGTACTTGGGGGACTCTGGCCTGGATGACTTCTTTCTGGACATTGACACATCTGCGGTA
GAAAAGGAGCCTGCACGGGCCCCACCAGAGCCTCCTCACAACCTCTTCTGTGCCCCAGGTTCTT
GGGAGTGGAATGAACTGGATCACATCATGGAAATCATTCTGGGGTCCTAAAACTGTGATAGAGG
GGATCGATCCTTCCTCATGTCATCTTCGGTGGCCTGGATCCCTGAATGCAACTCTGGGTGTGTG
TTTTTGTGGGGGCTCGAAGCAGTGACTATGGCCTCCTTTGTTCCCATTTCAGGGTTCCACAAAC
TGTCTTGCATGTGTGTGTGTGTCTGGTTACCCCGACCTTCTGTGAAGGTGGGTCTTCCTGAATT
AATTTATCTATTCCAAATGCCTTAACGAGACTCTGTTTCTGGGAGTCTGATTTTCCACTTACAC
ATTTCTTCCACCTTTCCTGCTAGTTCCCACTCCCCTGTGACCACTGGGGCCTCAGGGAAGATAA
AGAAAGCTGGGCCTGTCGAAGGATGACAGGGATGTGCTGCCAGGTTGCTATAGAAACCCAGGCT
CTGCCTCTTGCACCTTGAGGGGGTGGGAGGGGCTGGTGTCCTCCCTCCAGGCTGAACCCCACTT
CCTCGGCAGGACCCCAGTCTCAGCAGCCTCCTGATTTCATAACCAGGCCGGACCACGTGCAATA
GGGTGGAAACCAAACTGCTCCATGCCGGGTTATTTAAAAGAAAGGCAGAGTTTGTGGTGGCTTT
TTTTTTTTTTTTTGGATTGTTTGTAATTTTTTTAAATAAAAGTATTTTGGAAGGAGG

hide sequence

RefSeq Acc Id:

XM_047438716 ⟹ XP_047294672

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,444,335 (-)	NCBI

RefSeq Acc Id:

XM_047438717 ⟹ XP_047294673

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,444,077 (-)	NCBI

RefSeq Acc Id:

XM_047438718 ⟹ XP_047294674

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,440,844 - 40,442,488 (-)	NCBI

RefSeq Acc Id:

XM_054320771 ⟹ XP_054176746

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	19	43,261,506 - 43,264,994 (-)	NCBI

RefSeq Acc Id:

XM_054320772 ⟹ XP_054176747

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	19	43,261,506 - 43,264,737 (-)	NCBI

RefSeq Acc Id:

XM_054320773 ⟹ XP_054176748

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	19	43,261,506 - 43,263,147 (-)	NCBI

RefSeq Acc Id:

XM_054320774 ⟹ XP_054176749

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	19	43,261,506 - 43,264,737 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_037500	(Get FASTA)	NCBI Sequence Viewer
	NP_976219	(Get FASTA)	NCBI Sequence Viewer
	XP_006723242	(Get FASTA)	NCBI Sequence Viewer
	XP_047294672	(Get FASTA)	NCBI Sequence Viewer
	XP_047294673	(Get FASTA)	NCBI Sequence Viewer
	XP_047294674	(Get FASTA)	NCBI Sequence Viewer
	XP_054176746	(Get FASTA)	NCBI Sequence Viewer
	XP_054176747	(Get FASTA)	NCBI Sequence Viewer
	XP_054176748	(Get FASTA)	NCBI Sequence Viewer
	XP_054176749	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF05761	(Get FASTA)	NCBI Sequence Viewer
	AAH14061	(Get FASTA)	NCBI Sequence Viewer
	AAH50643	(Get FASTA)	NCBI Sequence Viewer
	BAG51975	(Get FASTA)	NCBI Sequence Viewer
	CAF86937	(Get FASTA)	NCBI Sequence Viewer
	EAW56966	(Get FASTA)	NCBI Sequence Viewer
	EAW56967	(Get FASTA)	NCBI Sequence Viewer
	EAW56968	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000325414
	ENSP00000325414.2
	ENSP00000375882
	ENSP00000375882.3
	ENSP00000469245
	ENSP00000469245.1
	ENSP00000472999.1
GenBank Protein	Q9UJW9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_976219 ⟸ NM_203344
- UniProtKB:	B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), Q9UJW9 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGGLKRKHSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQ LQAALRLAPAPALPPEPLFLGEEDFSLSATIGSILRELDTSMDGTEPPQNPVTPLGLQNEVPPQ PDPVFLEALSSRYLGDSGLDDFFLDIDTSAVEKEPARAPPEPPHNLFCAPGSWEWNELDHIMEI ILGS hide sequence

RefSeq Acc Id:	NP_037500 ⟸ NM_013368
- UniProtKB:	B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), Q9UJW9 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGGLKRKHSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQ LQAALRLAPAPALPPEPLFLGEEDFSLSATIGSILRELDTSMDGTEPPQNPVTPLGLQNEVPPQ PDPVFLEALSSRYLGDSGLDDFFLDIDTSAVEKEPARAPPEPPHNLFCAPGSWEWNELDHIMEI ILGS hide sequence

RefSeq Acc Id:	XP_006723242 ⟸ XM_006723179
- Peptide Label:	isoform X2
- UniProtKB:	B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), Q9UJW9 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGGLKRKHSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQ LQAALRLAPAPALPPEPLFLGEEDFSLSATIGSILRELDTSMDGTEPPQNPVTPLGLQNEVPPQ PDPVFLEALSSRYLGDSGLDDFFLDIDTSAVEKEPARAPPEPPHNLFCAPGSWEWNELDHIMEI ILGS hide sequence

Ensembl Acc Id:

ENSP00000472999 ⟸ ENST00000596456

Ensembl Acc Id:

ENSP00000469245 ⟸ ENST00000599706

Ensembl Acc Id:

ENSP00000325414 ⟸ ENST00000322354

Ensembl Acc Id:

ENSP00000375882 ⟸ ENST00000392028

RefSeq Acc Id:	XP_047294672 ⟸ XM_047438716
- Peptide Label:	isoform X1
- UniProtKB:	M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_047294673 ⟸ XM_047438717
- Peptide Label:	isoform X1
- UniProtKB:	M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_047294674 ⟸ XM_047438718
- Peptide Label:	isoform X2
- UniProtKB:	Q9UJW9 (UniProtKB/Swiss-Prot), B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054176746 ⟸ XM_054320771
- Peptide Label:	isoform X1
- UniProtKB:	M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054176749 ⟸ XM_054320774
- Peptide Label:	isoform X2
- UniProtKB:	Q9UJW9 (UniProtKB/Swiss-Prot), B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054176747 ⟸ XM_054320772
- Peptide Label:	isoform X1
- UniProtKB:	M0QXL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054176748 ⟸ XM_054320773
- Peptide Label:	isoform X2
- UniProtKB:	Q9UJW9 (UniProtKB/Swiss-Prot), B3KQB3 (UniProtKB/Swiss-Prot), Q96CQ2 (UniProtKB/Swiss-Prot), M0QXL4 (UniProtKB/TrEMBL)

Protein Domains

SERTA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9UJW9-F1-model_v2	AlphaFold	Q9UJW9	1-196	view protein structure

Promoters

RGD ID:

7239969

Promoter ID:

EPDNEW_H25731

Type:

initiation region

Name:

SERTAD3_1

Description:

SERTA domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	40,444,335 - 40,444,395	EPDNEW

RGD ID:

6796028

Promoter ID:

HG_KWN:29969

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000392028, UC010EGV.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	19	45,640,819 - 45,641,319 (-)	MPROMDB

RGD ID:

6796030

Promoter ID:

HG_KWN:29970

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

NM_203344

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	19	45,642,021 - 45,642,647 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:17931	AgrOrtholog
COSMIC	SERTAD3	COSMIC
Ensembl Genes	ENSG00000167565	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000322354	ENTREZGENE
	ENST00000322354.4	UniProtKB/Swiss-Prot
	ENST00000392028	ENTREZGENE
	ENST00000392028.8	UniProtKB/Swiss-Prot
	ENST00000596456.1	UniProtKB/TrEMBL
	ENST00000599706	ENTREZGENE
	ENST00000599706.1	UniProtKB/TrEMBL
GTEx	ENSG00000167565	GTEx
HGNC ID	HGNC:17931	ENTREZGENE
Human Proteome Map	SERTAD3	Human Proteome Map
InterPro	SERTA_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SERTAD3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:29946	UniProtKB/Swiss-Prot
NCBI Gene	29946	ENTREZGENE
OMIM	612125	OMIM
PANTHER	PTHR15530	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SERTA DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SERTA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA134941720	PharmGKB
PROSITE	SERTA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B3KQB3	ENTREZGENE
	M0QXL4	ENTREZGENE, UniProtKB/TrEMBL
	M0R352_HUMAN	UniProtKB/TrEMBL
	Q96CQ2	ENTREZGENE
	Q9UJW9	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	B3KQB3	UniProtKB/Swiss-Prot
	Q96CQ2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar

Send us a Message

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar