Gene: LRRC40 (leucine rich repeat containing 40)
Homo sapiens |
| Symbol: |
LRRC40
|
| Name: |
leucine rich repeat containing 40
|
| Description: |
INTERACTS WITH (-)-epigallocatechin 3-gallate; copper(2+) sulfate; cyclosporin A |
| Type: |
protein-coding
|
| RefSeq Status: |
VALIDATED
|
| Also known as: |
dJ677H15.1; FLJ20331; leucine-rich repeat-containing protein 40; OTTHUMP00000010944; RP4-677H15.1
|
| Orthologs: |
Mus musculus : Lrrc40
(leucine rich repeat containing 40)
MGI
Rattus norvegicus : Lrrc40
(leucine rich repeat containing 40)
|
| Latest Assembly: |
Human Genome Assembly GRCh37
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Human Alternate Assembly CHM1_1 | 1 | 70,681,765 - 70,742,639 | - | NCBI | Human Genome Assembly HuRef | 1 | 68,721,673 - 68,782,545 | - | NCBI | Human Genome Assembly GRCh37 | 1 | 70,610,485 - 70,671,361 | - | NCBI | Human Celera Assembly | 1 | 68,900,426 - 68,961,308 | - | NCBI | Human Genome Assembly Build 36 | 1 | 70,383,085 - 70,443,863 | - | NCBI | Human Cytogenetic Map | 1 | p31.1 | | NCBI |
|
| Model |
|
|
 Gene-Chemical Interaction Annotations
References - curated References - uncurated Genomics
Comparative Map Data
| LRRC40 (Homo sapiens) |
| Map | Chr | Position | Strand | Source |
|---|
Human Alternate Assembly CHM1_1 | 1 | 70,681,765 - 70,742,639 | - | NCBI | Human Genome Assembly HuRef | 1 | 68,721,673 - 68,782,545 | - | NCBI | Human Genome Assembly GRCh37 | 1 | 70,610,485 - 70,671,361 | - | NCBI | Human Celera Assembly | 1 | 68,900,426 - 68,961,308 | - | NCBI | Human Genome Assembly Build 36 | 1 | 70,383,085 - 70,443,863 | - | NCBI | Human Cytogenetic Map | 1 | p31.1 | | NCBI |
|
| Lrrc40 (Mus musculus) |
| Map | Chr | Position | Strand | Source |
|---|
Mouse Genome Assembly GRCm38 | 3 | 158,036,703 - 158,068,478 | + | NCBI | Mouse cM Map | 3 | | + | NCBI | Mouse Celera Assembly | 3 | 164,504,058 - 164,535,843 | + | NCBI | Mouse Genome Assembly Build 37 | 3 | 157,699,667 - 157,731,442 | + | NCBI | Mouse Genome Assembly Build 36.1 | 3 | 157,699,667 - 157,731,442 | + | NCBI | Mouse Cytogenetic Map | 3 | H4 | | NCBI |
|
| Lrrc40 (Rattus norvegicus) |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | 2 | q45 | | NCBI | RGSC Genome Assembly v5.0 | 2 | 283,515,494 - 283,533,189 | + | NCBI | RGSC Genome Assembly v3.4 | 2 | 256,194,404 - 256,212,099 | + | NCBI | Rat Celera Assembly | 2 | 238,913,590 - 238,931,286 | + | NCBI |
|
Position Markers
| D1S462 |
| Map | Chr | Position | Strand | Source |
|---|
Human GeneMap99-G3 RH Map | 1 | 3539.0 | | UniSTS | Human Whitehead-RH Map | 1 | 212.1 | | UniSTS | Human Stanford-G3 RH Map | 1 | 3583.0 | | UniSTS | Human deCODE Assembly Map | 1 | 97.72 | | UniSTS | Human TNG Radiation Hybrid Map | 1 | 39377.0 | | UniSTS | Human Genome Assembly HuRef | 1 | 68,781,564 - 68,781,686 | | UniSTS | Human Genome Assembly HuRef | 1 | 68,781,492 - 68,781,729 | | UniSTS | Human Genome Assembly GRCh37 | 1 | 70,670,308 - 70,670,545 | | UniSTS | Human Genome Assembly GRCh37 | 1 | 70,670,380 - 70,670,502 | | UniSTS | Human Celera Assembly | 1 | 68,960,327 - 68,960,449 | | UniSTS | Human Celera Assembly | 1 | 68,960,255 - 68,960,492 | | RGD | Human Genome Assembly Build 36 | 1 | 70,442,896 - 70,443,133 | | RGD | Human Cytogenetic Map | 1 | p31 | | UniSTS | Human Cytogenetic Map | 1 | p31.1 | | UniSTS | Genethon Human Genetic Map | 1 | 103.2 | | UniSTS | Marshfield Human Genetic Map | 1 | 101.48 | | UniSTS | Marshfield Human Genetic Map | 1 | 101.48 | | RGD |
|
| D1S2798 |
| Map | Chr | Position | Strand | Source |
|---|
Human Whitehead-YAC Contig Map | 1 | | | UniSTS | Human deCODE Assembly Map | 1 | 97.72 | | UniSTS | Human Genome Assembly HuRef | 1 | 68,776,009 - 68,776,176 | | UniSTS | Human Genome Assembly GRCh37 | 1 | 70,664,825 - 70,664,992 | | UniSTS | Human Celera Assembly | 1 | 68,954,772 - 68,954,939 | | RGD | Human Genome Assembly Build 36 | 1 | 70,437,413 - 70,437,580 | | RGD | Human Cytogenetic Map | 1 | p31.1 | | UniSTS | Genethon Human Genetic Map | 1 | 104.3 | | UniSTS | Marshfield Human Genetic Map | 1 | 102.02 | | RGD | Marshfield Human Genetic Map | 1 | 102.02 | | UniSTS |
|
| WI-15590 |
| Map | Chr | Position | Strand | Source |
|---|
Human Whitehead-RH Map | 1 | 216.7 | | UniSTS | Human GeneMap99-GB4 RH Map | 1 | 230.39 | | UniSTS | Human GeneMap99-GB4 RH Map | 1 | 189.6 | | UniSTS | Human Genome Assembly HuRef | 1 | 68,722,116 - 68,722,265 | | UniSTS | Human Genome Assembly GRCh37 | 1 | 70,610,928 - 70,611,077 | | UniSTS | Human Celera Assembly | 1 | 68,900,869 - 68,901,018 | | RGD | Human Genome Assembly Build 36 | 1 | 70,383,516 - 70,383,665 | | RGD | Human Cytogenetic Map | 1 | p31.1 | | UniSTS |
|
| D1S462 |
| Map | Chr | Position | Strand | Source |
|---|
Human GeneMap99-G3 RH Map | 1 | 3539.0 | | UniSTS | Human Stanford-G3 RH Map | 1 | 3583.0 | | UniSTS | Human TNG Radiation Hybrid Map | 1 | 39377.0 | | UniSTS | Human Cytogenetic Map | 1 | p31.1 | | UniSTS | Human Cytogenetic Map | 1 | p31 | | UniSTS |
|
QTLs in Region (Human Genome Assembly GRCh37)
| 1581540 | BP60_H | Blood pressure QTL 60 (human) | | | Blood pressure | hypertension susceptibility | 1 | 19957148 | 198620398 | Human | | 1300019 | BP25_H | Blood pressure QTL 25 (human) | 3.5 | | Blood pressure | systolic | 1 | 44873494 | 70873494 | Human | | 2314561 | GLUCO47_H | Glucose level QTL 47 (human) | 1.1 | | Glucose level | | 1 | 45239052 | 71239052 | Human | | 1357319 | AASTH8_H | Allergic/atopic asthma related QTL 8 (human) | 1.29 | | Reversible airflow obstruction | ETS positive | 1 | 45792083 | 93210281 | Human | | 1559226 | SLEP4_H | Serum leptin concentration QTL 4 (human) | 3.4 | | Hormone level | leptin | 1 | 48281268 | 100177738 | Human | | 2314743 | GLUCO70_H | Glucose level QTL 70 (human) | 1.5 | .015 | Glucose level | non-insulin dependent | 1 | 48599959 | 74599959 | Human | | 2293365 | PRSTS245_H | Prostate tumor susceptibility QTL 245 (human) | | | Prostate tumor susceptibility | | 1 | 50816757 | 76816757 | Human | | 2293421 | PRSTS244_H | Prostate tumor susceptibility QTL 244 (human) | | | Prostate tumor susceptibility | | 1 | 50816757 | 76816757 | Human | | 1578594 | LDLPS19_H | Low density lipoprotein particle size QTL 19 (human) | 2.56 | .00009 | LDL particle size | | 1 | 52994755 | 78994755 | Human | | 1578602 | LDLPS21_H | Low density lipoprotein particle size QTL 21 (human) | 2.05 | .00037 | LDL particle size | | 1 | 52994755 | 78994755 | Human | | 1578620 | LDLPS20_H | Low density lipoprotein particle size QTL 21 (human) | 2.04 | .00046 | LDL particle size | | 1 | 52994755 | 78994755 | Human | | 1298477 | OSTEAR1_H | Osteoarthritis QTL 1 (human) | 2.96 | | Joint/bone inflammation | hand osteoarthritis | 1 | 61229503 | 87229503 | Human | | 2315786 | GLUCO163_H | Glucose level QTL 163 (human) | 1.44 | .0115 | Glucose level | | 1 | 61972222 | 77655589 | Human | |
