Gene: LOC690309 (similar to DNA methyltransferase 3B)
Rattus norvegicus |
| Symbol: |
LOC690309
|
| Name: |
similar to DNA methyltransferase 3B
|
| Description: |
|
| Type: |
protein-coding
|
| RefSeq Status: |
MODEL
|
| Also known as: |
similar to DNA methyltransferase 3B
|
| Latest Assembly: |
RGSC Genome Assembly v3.4
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | 3 | q41 | | NCBI | RGSC Genome Assembly v5.0 | 3 | 155,558,768 - 155,591,157 | + | NCBI | RGSC Genome Assembly v3.4 | 3 | 144,080,177 - 144,112,035 | + | NCBI | Rat Celera Assembly | 3 | 140,919,664 - 140,951,910 | + | NCBI |
|
| Model |
|
Genomics
 Position Markers
| UniSTS:472909 |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | 3 | q41 | | UniSTS | RGSC Genome Assembly v5.0 | 3 | 155,576,334 - 155,576,408 | | UniSTS | RGSC Genome Assembly v5.0 | 3 | 155,538,611 - 155,538,685 | | UniSTS | RGSC Genome Assembly v3.4 | 3 | 144,058,520 - 144,058,594 | | UniSTS | RGSC Genome Assembly v3.4 | 3 | 144,097,377 - 144,097,451 | | UniSTS | Rat Celera Assembly | 3 | 140,937,252 - 140,937,326 | | UniSTS | Rat Celera Assembly | 3 | 140,899,686 - 140,899,760 | | UniSTS |
|
| UniSTS:525686 |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | 3 | q41 | | UniSTS | RGSC Genome Assembly v5.0 | 3 | 155,586,122 - 155,586,892 | | UniSTS | RGSC Genome Assembly v5.0 | 3 | 155,545,474 - 155,546,217 | | UniSTS | RGSC Genome Assembly v3.4 | 3 | 144,065,383 - 144,066,126 | | UniSTS | RGSC Genome Assembly v3.4 | 3 | 144,107,027 - 144,107,797 | | UniSTS | Rat Celera Assembly | 3 | 140,946,902 - 140,947,672 | | UniSTS | Rat Celera Assembly | 3 | 140,906,549 - 140,907,292 | | UniSTS |
|
QTLs in Region (RGSC Genome Assembly v3.4)
| 2301970 | Bw81 | Body weight QTL 81 | 5.19 | | Body weight | | 3 | 39052756 | 158038027 | Rat | | 2301971 | Cm71 | Cardiac mass QTL 71 | 4.63 | | Cardiac mass | left ventricle | 3 | 39052756 | 158038027 | Rat | | 1559282 | Emca5 | Estrogen-induced mammary cancer QTL 5 | 3.9 | | Mammary tumor susceptibility | estradiol-induced | 3 | 41054012 | 171063335 | Rat | | 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | | | Gland mass | thymus | 3 | 44551252 | 149496698 | Rat | | 1581568 | Rf53 | Renal function QTL 53 | | | Renal function | urine protein level | 3 | 53876762 | 163443738 | Rat | | 1581546 | Pur13 | Proteinuria QTL 13 | 2.93 | .0335 | Renal function | urine protein level | 3 | 76620970 | 148642985 | Rat | | 631841 | Niddm39 | Non-insulin dependent diabetes mellitus QTL 39 | 3.36 | | Glucose level | post-pancreatectomy | 3 | 93894678 | 161985069 | Rat | | 2293087 | Iddm27 | Insulin dependent diabetes mellitus QTL 27 | 2.37 | | Glucose level | insulin-dependent | 3 | 96506745 | 149496698 | Rat | | 2312659 | Slep7 | Serum leptin concentration QTL 7 | | .001 | Hormone level | leptin | 3 | 97523869 | 170016653 | Rat | | 2312670 | Bw94 | Body weight QTL 94 | | .01 | Body weight | adiposity index | 3 | 97523869 | 170016653 | Rat | | 2312673 | Scl63 | Serum cholesterol level QTL 63 | | .001 | Lipid level | serum cholesterol | 3 | 97523869 | 170016653 | Rat | | 2302373 | Gluco39 | Glucose level QTL 39 | 5.01 | | Glucose level | | 3 | 97524000 | 163778606 | Rat | | 1300161 | Rf10 | Renal function QTL 10 | 3.57 | | Renal function | hypertension related renal vascular resistance | 3 | 101298208 | 163335184 | Rat | | 619618 | Rf3 | Renal disease susceptibility QTL 3 | 6.5 | .001 | Renal function | urine albumin excretion rate to body weight ratio | 3 | 108688653 | 153688653 | Rat | | 1578754 | Stresp16 | Stress response QTL 16 | 4 | .001 | Stress response | plasma renin activity | 3 | 113902006 | 158902006 | Rat | | 1576306 | Schws3 | Schwannoma susceptibility QTL 3 | | .001 | Neural tumor susceptibility | tumor incidence | 3 | 120714678 | 165714678 | Rat | | 1300173 | Rf11 | Renal function QTL 11 | 3.38 | | Renal function | hypertension related renal blood flow | 3 | 121618954 | 147990731 | Rat | | 1300159 | Kidm4 | Kidney mass QTL 4 | 3.83 | | Kidney mass | hypertension related | 3 | 121618954 | 159769019 | Rat | | 1598877 | Bp285 | Blood pressure QTL 285 | 1.5 | .03 | Blood pressure | systolic | 3 | 122541511 | 167541511 | Rat | | 631541 | Bp81 | Blood pressure QTL 81 | 4 | | Blood pressure | systolic | 3 | 124893448 | 171063335 | Rat | | 2303620 | Vencon4 | Ventilatory control QTL 4 | 3.1 | | Ventilatory control | hypoxic challenge | 3 | 127988419 | 170016653 | Rat | | 631673 | Iddm13 | Insulin dependent diabetes mellitus QTL 13 | 1.3 | .663 | Glucose level | | 3 | 131188558 | 163778754 | Rat | | 1578653 | Vnigr3 | Vascular neointimal growth QTL 3 | 3.1 | | Vascular neointimal growth after injury | blood vessel neointimal area | 3 | 132947812 | 171063335 | Rat | | 1578656 | Vnigr2 | Vascular neointimal growth QTL 2 | 4.2 | | Vascular neointimal growth after injury | blood vessel lumen size | 3 | 132947812 | 171063335 | Rat | | 2298477 | Eau4 | Experimental allergic uveoretinitis QTL 4 | | .0011 | Uvea inflammation | | 3 | 139485124 | 171063335 | Rat | | 5686842 | Rf59 | Renal function QTL 59 | | | Renal function | urine protein level | 3 | 141890118 | 149038578 | Rat | | 1331726 | Bp208 | Blood pressure QTL 208 | 3.129 | | Blood pressure | mean arterial | 3 | 143214619 | 164269487 | Rat | | 61335 | Bp20 | Blood pressure QTL 20 | 3 | | Blood pressure | salt-loaded systolic | 3 | 143214737 | 158037866 | Rat | | 1298068 | Bp167 | Blood pressure QTL 167 | | .004 | Blood pressure | systolic | 3 | 144002709 | 171063335 | Rat | |
Sequence
Nucleotide Sequences
Reference Sequences
| RefSeq Acc Id: |
XM_003749601
|
| RefSeq Status: |
|
| Type: |
CODING
|
| Protein Acc Id: |
XP_003749649
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
RGSC Genome Assembly v5.0 | 3 | 155,558,768 - 155,591,157 | + | NCBI |
|
| RefSeq Acc Id: |
XM_003753816
|
| RefSeq Status: |
|
| Type: |
CODING
|
| Protein Acc Id: |
XP_003753864
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Rat Celera Assembly | 3 | 140,919,664 - 140,951,910 | + | NCBI |
|
Protein Sequences Strain Variation
Strain Sequence Variants
ACI/Eur (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
ACI/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN-Lx (ICL)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
SOLID |
| Secondary Analysis: |
BWA, GATK, Samtools |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
MC-A654-5QB00 |
|
|
BN-Lx (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/NHsdMcwi (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/SsN (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Buf/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
COP/Crl (MCW & UW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob)
Univiersity of Wisconsin (Jim Shull) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
| Breeder: |
Charles River |
| Grant Information: |
NIH (CA77876) |
|
|
F344/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHH/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
FHH/EurMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHL/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
GH/OmrMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
|
|
LE/Stm (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Dr. Tadao Serikawa, Kyoto Japan. |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
M520/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
MR/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHR/Olalpcv (ICL)
|
|
| Sequenced By: |
Imperial College London (Dr Timothy Aitman)
University of British Columbia (Dr. Steven Jones) |
| Platform: |
Illumina Hi-seq 2000 and GAII |
| Secondary Analysis: |
BWA, GATK |
| Breeder: |
Institute of Physiology, Academy of Sciences of the Czech Republic, Prague |
| Grant Information: |
LSHG-CT-2005-019015, HEALTH-F4-2010-241504 |
|
|
SHR/Olalpcv (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
Illumina |
| Secondary Analysis: |
GATK |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHRSP/Gcrc (MDC)
|
|
| Sequenced By: |
Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
University of Glasgow, Anna Dominiczak |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SR/JrHsd (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Breeder: |
Harlan |
|
|
SS/JrHsdMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Grant Information: |
R01 HL089930 |
|
|
SS/JrHsdMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WKY/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WN/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Additional Information
External Database Links
| Database |
Acc Id |
Source(s) |
| Entrez Gene |
690309 |
ENTREZGENE |
| KEGG Report |
rno:690309 |
ENTREZGENE |
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2008-01-09 |
LOC690309 |
similar to DNA methyltransferase 3B |
LOC682863 |
similar to DNA methyltransferase 3B |
Data Merged |
23187 |
APPROVED |
| 2006-11-20 |
LOC690309 |
similar to DNA methyltransferase 3B |
|
|
Symbol and Name status set to provisional |
1724 |
PROVISIONAL |
| 2006-11-20 |
LOC682863 |
similar to DNA methyltransferase 3B |
|
|
Symbol and Name status set to provisional |
1724 |
PROVISIONAL |
|
|
| RGD Object Information |
| RGD ID: |
1597378 |
| Created: |
2006-11-20 |
| Species: |
Rattus norvegicus |
| Last Modified: |
2013-04-16 |
| Status: |
ACTIVE |
|
