LOC691658 (similar to anterior pharynx defective 1b homolog)

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Keyword

Gene: LOC691658 (similar to anterior pharynx defective 1b homolog) Rattus norvegicus

Symbol:

LOC691658

Name:

similar to anterior pharynx defective 1b homolog

Description:

INVOLVED IN positive regulation of catalytic activity (inferred); protein processing (inferred); FOUND IN integral to membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

similar to anterior pharynx defective 1b homolog

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	8	q24		NCBI
RGSC Genome Assembly v3.4	8	71,088,414 - 71,106,232	-	NCBI
Rat Celera Assembly	8	66,730,757 - 66,741,378	-	NCBI

Model

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Gene Ontology Annotations

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		Brain/spinal cord inflammation	demyelination	8	8294860	115338082	Rat
61353	Bp35	Blood pressure QTL 35			Blood pressure		8	9581132	103685771	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		Renal function	urine albumin level	8	19815642	98451660	Rat
631842	Inf1	Infertility severity QTL 1	4.1	.001	Seminal vesicle mass		8	26358063	71358063	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		Kidney mass		8	28414004	103684785	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		Blood pressure	post sympathetic nervous system block	8	28414004	103684785	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		Cardiac mass		8	28414004	103684785	Rat
2303572	Insul13	Insulin level QTL 13	2		Insulin level		8	29077622	74077622	Rat
2303564	Gluco43	Glucose level QTL 43	3		Glucose level	fasting	8	29077622	74077622	Rat
1300146	Rf17	Renal function QTL 17	2.9		Renal function	salt-loaded renal blood flow	8	29559446	74559446	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		Cardiac mass		8	29559446	103672447	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		Renal function	urine albumin level	8	30878636	74178909	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5	0	Neurodegradation	motoneuron cell number	8	31508524	98947320	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	.0001	Bone strength		8	32203394	86628010	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	.0001	Bone structure		8	32203394	86628010	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	.0001	Bone structure		8	32203394	86628010	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	.0001	Bone structure		8	32203394	86628010	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		Renal function	urine abumin level	8	32203394	98986263	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	.0001	Renal function	urine protein level	8	32203394	98986263	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	.0001	Renal histology	kidney lesion grade	8	32203499	98986085	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	.001	Renal function	urine albumin level	8	32203499	98986085	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		Lipid level	serum cholesterol	8	32203499	110106272	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		Lipid level	cholesterol	8	33897608	78897608	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	.0005	Epididymal fat weight		8	34808657	79808657	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	.0004	Insulin level	fasting	8	38003289	103665018	Rat
61358	Bp39	Blood pressure QTL 39	2		Blood pressure		8	38902937	83902937	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		Liver tumor resistance	nodule number	8	43313902	87122960	Rat
1358906	Bp253	Blood pressure QTL 253	4	.0004	Blood pressure	post sympathetic nervous system block	8	43313902	98451660	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	.0001	Bone mineral density	distal femur volumetric BMD by pQCT	8	43561064	129041809	Rat
1331769	Rf39	Renal function QTL 39	3.871		Renal function	urine volume	8	44484215	103672447	Rat
1298079	Activ2	Activity QTL 2	9.5	.000001	Activity level	novel environment	8	44484215	129041809	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	.0001	Lipid level	triglyceride	8	44484347	74178405	Rat
70161	Bp62	Blood pressure QTL 62	2.9	.001	Blood pressure	salt-loaded systolic	8	45291674	94514282	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	.0001	Bone structure		8	53049279	86628010	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		Bone structure		8	53049279	86628010	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		Bone structure	tibial area	8	53049279	86628010	Rat
2303570	Gluco48	Glucose level QTL 48	2		Glucose level	post-restraint	8	53621297	98621297	Rat
1358912	Bw51	Body weight QTL 51	2.95		Body weight		8	54364071	112242906	Rat
2293697	Bmd39	Bone mineral density QTL 39			Bone mineral density		8	57109012	103548876	Rat
1582243	Bw66	Body weight QTL 66	3.4	.0048	Body weight		8	57308572	89558994	Rat
1582254	Kidm31	Kidney mass QTL 31			Kidney mass		8	57308572	89558994	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	.0005	Liver tumor resistance	nodule volume	8	57308572	103684785	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		Cardiac mass	salt-loaded	8	58135371	104697495	Rat
2301402	Bp316	Blood pressure QTL 316		.005	Blood pressure	mean arterial	8	58548876	103548876	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	.0019	Lipid level	triglyceride	8	64616911	116844692	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	.005	Blood pressure	systolic	8	64762472	124310219	Rat
631653	Bp125	Blood pressure QTL 125	3.3		Blood pressure	systolic	8	70474667	115474667	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on LOC691658
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1597236
Created:	2006-11-20
Species:	Rattus norvegicus
Last Modified:	2012-05-15
Status:	ACTIVE