Pcdha13-ps1 (protocadherin alpha 13, pseudogene 1) - Rat Genome Database

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Gene: Pcdha13-ps1 (protocadherin alpha 13, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Pcdha13-ps1
Name: protocadherin alpha 13, pseudogene 1
RGD ID: 1597144
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC317356; protocadherin alpha-13-like; similar to protocadherin alpha 13
Related Functional Gene: Pcdha13  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X15,892,505 - 15,895,067 (-)NCBIGRCr8
mRatBN7.2X13,220,001 - 13,222,563 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X13,709,703 - 13,713,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X14,495,627 - 14,499,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,370,407 - 25,399,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pcdha13-ps1
24 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006256688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_006256688   ⟹   XP_006256750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X13,709,703 - 13,713,872 (+)NCBI
Rnor_5.0X14,495,627 - 14,499,796 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2987 BioCyc
NCBI Gene 317356 ENTREZGENE
PhenoGen Pcdha13-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pcdha13-ps1  protocadherin alpha 13, pseudogene 1  LOC317356  similar to protocadherin alpha 13  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC317356  similar to protocadherin alpha 13      Symbol and Name status set to provisional 70820 PROVISIONAL