Tbc1d1-ps1 (TBC1 domain family member 1, pseudogene 1) - Rat Genome Database

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Gene: Tbc1d1-ps1 (TBC1 domain family member 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Tbc1d1-ps1
Name: TBC1 domain family member 1, pseudogene 1
RGD ID: 1597134
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC364103; similar to TBC1 domain family, member 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8147,828,595 - 7,835,307 (-)NCBIGRCr8
mRatBN7.2147,523,750 - 7,530,777 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0149,084,156 - 9,085,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0149,049,629 - 9,051,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4148,774,316 - 8,798,280 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera147,646,790 - 7,648,422 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Tbc1d1-ps1
92 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat

Markers in Region
D14Got17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,536,526 - 7,536,671 (+)MAPPERmRatBN7.2
Rnor_6.0149,096,909 - 9,097,053NCBIRnor6.0
Rnor_5.0149,062,382 - 9,062,526UniSTSRnor5.0
RGSC_v3.4148,787,453 - 8,787,598RGDRGSC3.4
RGSC_v3.4148,787,454 - 8,787,598UniSTSRGSC3.4
RGSC_v3.1148,787,454 - 8,787,598RGD
Celera147,659,258 - 7,659,402UniSTS
RH 3.4 Map14130.38UniSTS
RH 3.4 Map14130.38RGD
RH 2.0 Map160.0RGD
Cytogenetic Map14p22UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-16448 BioCyc
NCBI Gene 364103 ENTREZGENE
PhenoGen Tbc1d1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tbc1d1-ps1  TBC1 domain family member 1, pseudogene 1  LOC364103  similar to TBC1 domain family, member 1  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC364103  similar to TBC1 domain family, member 1      Symbol and Name status set to provisional 70820 PROVISIONAL