Tsbp1 (testis expressed basic protein 1)

Gene: Tsbp1 (testis expressed basic protein 1) Rattus norvegicus

Analyze

Symbol:

Tsbp1

Name:

testis expressed basic protein 1

RGD ID:

1597063

Description:

Predicted to be located in membrane. Orthologous to human TSBP1 (testis expressed basic protein 1); INTERACTS WITH bisphenol A; cadmium dichloride; trichloroethene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC114433; Tesb; Tesb pseudogene; testis specific basic protein; testis-expressed basic protein 1; uncharacterized protein C6orf10 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Is Marker For:

Strains: DA.AS2-(Tesb-RT1-DMb)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,411,926 - 4,469,214 (-)	NCBI		GRCr8
mRatBN7.2	20	4,410,002 - 4,467,284 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,410,004 - 4,457,053 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,170,226 - 5,219,942 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,531,964 - 4,581,678 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	5,005,225 - 5,052,249 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	4,178,655 - 4,235,947 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	4,178,686 - 4,235,950 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	6,258,025 - 6,315,303 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,532,358 - 4,579,409 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	6,012,617 - 6,059,663 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

D-glucose (ISO)

fructose (ISO)

glucose (ISO)

herbicide (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15060004	PMID:21630459

Genomics

Comparative Map Data

Tsbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,411,926 - 4,469,214 (-)	NCBI		GRCr8
mRatBN7.2	20	4,410,002 - 4,467,284 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,410,004 - 4,457,053 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,170,226 - 5,219,942 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,531,964 - 4,581,678 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	5,005,225 - 5,052,249 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	4,178,655 - 4,235,947 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	4,178,686 - 4,235,950 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	6,258,025 - 6,315,303 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,532,358 - 4,579,409 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	6,012,617 - 6,059,663 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

TSBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	32,292,698 - 32,371,903 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	32,288,526 - 32,371,907 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	32,260,475 - 32,339,680 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	32,368,453 - 32,447,634 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	32,368,469 - 32,447,634	NCBI
Celera	6	33,827,603 - 33,906,430 (-)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	32,014,824 - 32,093,640 (-)	NCBI		HuRef
CHM1_1	6	32,262,950 - 32,342,143 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	32,145,999 - 32,224,841 (-)	NCBI		T2T-CHM13v2.0

Tsbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	34,617,749 - 34,679,708 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	34,617,794 - 34,679,708 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	34,398,767 - 34,460,734 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	34,398,820 - 34,460,734 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	34,535,765 - 34,597,679 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,024,335 - 34,068,780 (+)	NCBI		MGSCv36	mm8
Celera	17	37,167,318 - 37,229,216 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.0	NCBI

Tsbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	830,178 - 915,199 (-)	NCBI	ChiLan1.0	ChiLan1.0

TSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,755,541 - 46,839,649 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,716,834 - 42,801,131 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,939,658 - 32,021,872 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,818,649 - 32,899,107 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TSBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,749,856 - 1,920,630 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,881,267 - 2,066,496 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	2,084,816 - 2,194,622 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	12	1,736,871 - 1,926,564 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,806,337 - 2,006,128 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,872,898 - 2,072,882 (-)	NCBI		UU_Cfam_GSD_1.0

Tsbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	36,827,182 - 36,915,025 (-)	NCBI		HiC_Itri_2

TSBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	24,406,241 - 24,409,937 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	28,417,132 - 28,483,729 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	39,680,157 - 39,743,399 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	32,186,563 - 32,259,174 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Tsbp1
563 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	215
Count of miRNA genes:	148
Interacting mature miRNAs:	157
Transcripts:	ENSRNOT00000060378
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61448	Ciaa1	CIA Autoantibody QTL 1	30	0.001	blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	20	2646395	4597031	Rat
61472	Aia1	Adjuvant induced arthritis QTL 1	18	0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	2646395	4597031	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
737973	Pia21	Pristane induced arthritis QTL 21	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	4606812	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat

Markers in Region

D20Rat42

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,459,698 - 4,459,841 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,186,104 - 4,186,246	NCBI	Rnor6.0
Rnor_5.0	20	6,265,460 - 6,265,602	UniSTS	Rnor5.0
RGSC_v3.4	20	4,582,055 - 4,582,197	UniSTS	RGSC3.4
RGSC_v3.4	20	4,582,054 - 4,582,198	RGD	RGSC3.4
RGSC_v3.1	20	4,582,281 - 4,582,425	RGD
SHRSP x BN Map	20	0.0	UniSTS
SHRSP x BN Map	20	0.0	RGD
Cytogenetic Map	20	p12	UniSTS

D20Uia1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,448,720 - 4,448,860 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,197,085 - 4,197,224	NCBI	Rnor6.0
Rnor_5.0	20	6,276,441 - 6,276,580	UniSTS	Rnor5.0
RGSC_v3.4	20	4,571,076 - 4,571,216	RGD	RGSC3.4
RGSC_v3.4	20	4,571,077 - 4,571,216	UniSTS	RGSC3.4
RGSC_v3.1	20	4,571,303 - 4,571,443	RGD
Celera	20	6,051,335 - 6,051,470	UniSTS
Cytogenetic Map	20	p12	UniSTS

D20Yum71

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,423,341 - 4,423,493 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,222,456 - 4,222,607	NCBI	Rnor6.0
Rnor_5.0	20	6,301,812 - 6,301,963	UniSTS	Rnor5.0
RGSC_v3.4	20	4,545,698 - 4,545,849	UniSTS	RGSC3.4
Celera	20	6,025,958 - 6,026,109	UniSTS
Cytogenetic Map	20	p12	UniSTS

D20Yum70

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,409,587 - 4,409,812 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	4,236,137 - 4,236,363	NCBI	Rnor6.0
Rnor_5.0	20	6,315,493 - 6,315,719	UniSTS	Rnor5.0
RGSC_v3.4	20	4,531,942 - 4,532,168	UniSTS	RGSC3.4
Celera	20	6,012,201 - 6,012,427	UniSTS
Cytogenetic Map	20	p12	UniSTS

Related Rat Strains

The following Strains have been annotated to Tsbp1

DA.AS2-(Tesb-RT1-DMb)

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										7
Low								1		17
Below cutoff	3	17	5	14	5	2	4	36	29	15	8	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000060378 ⟹ ENSRNOP00000057121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,410,004 - 4,457,053 (-)	Ensembl
Rnor_6.0 Ensembl	20	4,188,892 - 4,235,950 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,410,004 - 4,457,052 (-)	Ensembl
Rnor_6.0 Ensembl	20	4,188,893 - 4,235,950 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080641 ⟹ ENSRNOP00000071654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	4,178,686 - 4,191,528 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081438 ⟹ ENSRNOP00000068847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	4,188,766 - 4,192,374 (+)	Ensembl

RefSeq Acc Id:

NM_001113183 ⟹ NP_001106654

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,458,979 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,457,053 (-)	NCBI
Rnor_6.0	20	4,188,892 - 4,235,947 (+)	NCBI
Rnor_5.0	20	6,258,025 - 6,315,303 (+)	NCBI
RGSC_v3.4	20	4,532,358 - 4,579,409 (-)	RGD
Celera	20	6,012,617 - 6,059,663 (-)	RGD

Sequence:

show sequence

CTGCACCTTTGTCTACGAGGATCTCCCTGATACTCAGGGTCTCATAGCTCAGGAGTGGTGGCCT
TTCAACACTTGTTTTATCTTGAGCTCTCTCTGACAAAAGAGTCCAGATGACGTGGAACTTACTG
GAGCCAATAACCGGAAGATGGCAGACCTCGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGC
CCTTGCTATTCTGGCTATTCTGATAGCAAGATGGACGCGGCGCAGACATGAGGCGCGAGTCTCC
AGATACACTTCAGAACAGAGTGCTGGGCTTCTGGATCATGAGGATGGTATTTCCCATGGGAGGC
ACAAAAGAGGAAGAGGATCTCGATGCTCGTTTTCATCGGATAGCGCTGGAACCATTGGACCTAT
AATGCAGTTCTCCGCACCTATCCCTGGAGCTACGGGACCTATCAAACTGTCTCAAAAAACCTTC
CTGCAAACTCCTGGCCCTCTTGTGCAATGTATGGATTCTAGTGAAAGCTGCAGCCCTGAGGGAT
CCAACGCTGTAATGCCCATGGAAATGTGTTATCCACAGCCATCACTGAAGTCTAGCTGTTATCA
GCAATGTTCAGTCAAGCCTAGCTGCCAACAAGGAATGATGCCTCTCTGCCCTGAGTCGCAGACT
TTACCCTTATTAATTACACAGAGAACTGGAGTGAAAAAGCATTCAGGCCAGATGATGAGGCACG
GAGGGAGCGTGACCTTCCAGGAAGACAACGGAGACACAATGAAGTGGAGAAGATGCCAGTGCGA
GTTCTGCTGTCCTAAGAGATACGAGTCGCACATGGCCCACCAGCGACGAGAACCCATATGGTGT
GAAGAACCAGCGCCGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGC
AGCAGCAGCAGCAGCCTCCTCCTACTCCTCCTCCACGAAGACAAGAATCTCAAGTAAGATTTGA
CCAAAGAAATGAAAACTGCTATGACGCCCAGACCATTTGTTATGAAGAACCATTCCTTTTCAGA
AGACTGGAGTCCCTGATAAGGAAGAACCAAGACGGGATAGTAATAAAGCAAAATGAAGGCGGCC
TCCTGATAAAGAAGGCTGAGGACCACCCATCAGAACACAAAAAGAAAGGGAAACCCAAGAAGTC
ATCAGAACCCCAAGACACTGACTCGGATTCAAGTGCACCACCAAGCTCAGATCAACCTGAAGCA
AAACCCGAACCACAACCAGACGAAGGGGAGGAGAAGAAACAAAAGAAAGAAAAGAAGAAAAAGA
AGAAAAAAGACAAAGGCGATGGGTGATAGGGCAAAACACGACCTCCAATGTGATCTCCCCATCA
GATACAAGCCGTGTCTGCCCTCACCCCAGTGCATCATGGTTATCAAATTCATTCCCTCTAGACA
TCTTCATTTTTTGCTGTTCTGAGGTTTGCCCTTACTACACCTCCCTGCCGCAATCTTCATCTTC
CAAATTTTGCTTTATTAGTCAAAATATATAATCCAATTAAGAAAGATGGTGTTTTCTGAAATAA
AACCTTTACTAAATATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017601743 ⟹ XP_017457232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI
Rnor_6.0	20	4,178,656 - 4,235,947 (+)	NCBI

Sequence:

show sequence

CTCACTGCCTTCAGTTAGGGAAATCCTAAGAAGTTAATGGAAAGAGAAGGTTAGTCACGGTGTA
GTCCTGATACAAGCGGCGTGTCCAGCTCGTCTCCGGCCCTCTGTGTAGTCCCTGGGCAGGGCGG
CAGCCCCGCAAAAGCTGCTGCACCACAAAAGCCCTCAAGGCGGCGGCAGGCCTCTCCACACCGC
CCCAGCCTTCGACGCCAAGGAGAGGAAAACTGTCAATATATCGAAAGCACTGAAGTCCCAACAA
AGGAGAGCTTGCAGCCTGAGCTGAGCCTACTTCCCACTGGGCCCAGTTCTTCCACAGGGCTGGC
TGCTTATCCCATGAAACACATCCTCAGACAGTAAGCCTTCAACTCTGAAGGAAAACGTGACTTT
GTGAACATCACATGGGTTTTGTGATAAACTGAGCCATGTGTTGAGTCCAGATGACGTGGAACTT
ACTGGAGCCAATAACCGGAAGATGGCAGACCTCGGCTGTTGACTTCAAAGGTACAGTCCCAGCA
AATCTCTGAAGGTGGATTTGGCAGCAGAATTTCCTCACATTGCCAAGCATCTATAAGGCCCCAG
AAGAAAAATGTCCTTCCTGCAGTTTGGAGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGCC
CTTGCTATTCTGGCTATTCTGATAGCAAGATGGACGCGGCGCAGACATGAGGCGCGAGTCTCCA
GATACACTTCAGAACAGAGTGCTGGGCTTCTGGATCATGAGGATGGTATTTCCCATGGGAGGCA
CAAAAGAGGAAGAGGATCTCGATGCTCGTTTTCATCGGATAGCGGGCCAACTGGTGTTTCTGTA
GGAGGAAACTCAGTCAGTCACCACTCCATGGGAATGTGCAGATCCAATCCTGCTCTATTCCAAG
AACCGCAAACTTCAGGCCAAGGACCAGCAAGTAGAACAAGAAGCTCCAAGTCCTTACACGACCC
TCTAACAGGCAAGACTGGAGAAATCACTGGAACCATTGGACCTATAATGCAGTTCTCCGCACCT
ATCCCTGGAGCTACGGGACCTATCAAACTGTCTCAAAAAACCTTCCTGCAAACTCCTGGCCCTC
TTGTGCAATGTATGGATTCTAGTGCTGTAATGCCCATGGAAATGTGTTATCCACAGCCATCACT
GAAGTCTAGCTGTTATCAGCAATGTTCAGTCAAGCCTAGCTGCCAACAAGGAATGATGCCTCTC
TGCCCTGAGTCGCAGACTTTACCCTTATTAATTACACAGAGAACTGGAGCAAGACGTGGACCAC
CTATAATACTGAAAAAGCATTCAGGCCAGATGATGAGGCACGGAGGGAGCGTGACCTTCCAGGA
AGACAACGGAGACACAATGAAGTGGAGAAGATGCCAGTGCGAGTTCTGCTGTCCTAAGAGATAC
GAGTCGCACATGGCCCACCAGCGACGAGAACCCATATGGTGTGAAGAACCAGCGCCGCAGCAGC
AGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCC
TACTCCTCCTCCACGAAGACAAGAATCTCAAGTAAGATTTGACCAAAGAAATGAAAACTGCTAT
GACGCCCAGACCATTTGTTATGAAGAACCATTCCTTTTCAGAAGACTGGAGTCCCTGATAAGGA
AGAACCAAGACGGGATAGTAATAAAGCAAAATGAAGGCGGCCTCCTGATAAAGAAGGCTGAGGA
CCACCCATCAGAACACAAAAAGAAAGGGAAACCCAAGAAGTCATCAGAACCCCAAGACACTGAC
TCGGATTCAAGTGCACCACCAAGCTCAGATCAACCTGAAGCAAAACCCGAACCACAACCAGACG
AAGGGGAGGAGAAGAAACAAAAGAAAGAAAAGAAGAAAAAGAAGAAAAAAGACAAAGGCGATGG
GTGATAGGGCAAAACACGACCTCCAATGTGATCTCCCCATCAGATACAAGCCGTGTCTGCCCTC
ACCCCAGTGCATCATGGTTATCAAATTCATTCCCTCTAGACATCTTCATTTTTTGCTGTTCTGA
GGTTTGCCCTTACTACACCTCCCTGCCGCAATCTTCATCTTCCAAATTTTGCTTTATTAGTCAA
AATATATAATCCAATTAAGAAAGATGGTGTTTTCTGAAATAAAACCTTTACTAAATATCTAA

hide sequence

RefSeq Acc Id:

XM_017601746 ⟹ XP_017457235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI
Rnor_6.0	20	4,178,656 - 4,235,947 (+)	NCBI

Sequence:

show sequence

CTCACTGCCTTCAGTTAGGGAAATCCTAAGAAGTTAATGGAAAGAGAAGGTTAGTCACGGTGTA
GTCCTGATACAAGCGGCGTGTCCAGCTCGTCTCCGGCCCTCTGTGTAGTCCCTGGGCAGGGCGG
CAGCCCCGCAAAAGCTGCTGCACCACAAAAGCCCTCAAGGCGGCGGCAGGCCTCTCCACACCGC
CCCAGCCTTCGACGCCAAGGAGAGGAAAACTGTCAATATATCGAAAGCACTGAAGTCCCAACAA
AGGAGAGCTTGCAGCCTGAGCTGAGCCTACTTCCCACTGGGCCCAGTTCTTCCACAGGGCTGGC
TGCTTATCCCATGAAACACATCCTCAGACAGTAAGCCTTCAACTCTGAAGGAAAACGTGACTTT
GTGAACATCACATGGGTTTTGTGATAAACTGAGCCATGTGTTGAGTCCAGATGACGTGGAACTT
ACTGGAGCCAATAACCGGAAGATGGCAGACCTCGGCTGTTGACTTCAAAGGTACAGTCCCAGCA
AATCTCTGAAGGTGGATTTGGCAGCAGAATTTCCTCACATTGCCAAGCATCTATAAGGCCCCAG
AAGAAAAATGTCCTTCCTGCAGTTTGGAGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGCC
CTTGCTATTCTGGCTATTCTGATAGCAAGATGGACGCGGCGCAGACATGAGGCGCGAGTCTCCA
GATACACTTCAGAACAGAGTGCTGGGCTTCTGGATCATGAGGATGGTATTTCCCATGGGAGGCA
CAAAAGAGGAAGAGGATCTCGATGCTCGTTTTCATCGGATAGCGGGCCAACTGGTGTTTCTGTA
GGAGGAAACTCAGTCAGTCACCACTCCATGGGAATGTGCAGATCCAATCCTGCTCTATTCCAAG
AACCGCAAACTTCAGGCCAAGGACCAGCAAGTAGAACAAGAAGCTCCAAGTCCTTACACGACCC
TCTAACAGGCAAGACTGGAGAAATCACTGGAACCATTGGACCTATAATGCAGTTCTCCGCACCT
ATCCCTGGAGCTACGGGACCTATCATGCAAACTCCTGGCCCTCTTGTGCAATGTATGGATTCTA
GTGCTGTAATGCCCATGGAAATGTGTTATCCACAGCCATCACTGAAGTCTAGCTGTTATCAGCA
ATGTTCAGTCAAGCCTAGCTGCCAACAAGGAATGATGCCTCTCTGCCCTGAGTCGCAGACTTTA
CCCTTATTAATTACACAGAGAACTGGAGCAAGACGTGGACCACCTATAATACTGAAAAAGCATT
CAGGCCAGATGATGAGGCACGGAGGGAGCGTGACCTTCCAGGAAGACAACGGAGACACAATGAA
GTGGAGAAGATGCCAGTGCGAGTTCTGCTGTCCTAAGAGATACGAGTCGCACATGGCCCACCAG
CGACGAGAACCCATATGGTGTGAAGAACCAGCGCCGCAGCAGCAGCAGCAACAGCAGCAGCAGC
AGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCCTACTCCTCCTCCACGAAGACA
AGAATCTCAAGTAAGATTTGACCAAAGAAATGAAAACTGCTATGACGCCCAGACCATTTGTTAT
GAAGAACCATTCCTTTTCAGAAGACTGGAGTCCCTGATAAGGAAGAACCAAGACGGGATAGTAA
TAAAGCAAAATGAAGGCGGCCTCCTGATAAAGAAGGCTGAGGACCACCCATCAGAACACAAAAA
GAAAGGGAAACCCAAGAAGTCATCAGAACCCCAAGACACTGACTCGGATTCAAGTGCACCACCA
AGCTCAGATCAACCTGAAGCAAAACCCGAACCACAACCAGACGAAGGGGAGGAGAAGAAACAAA
AGAAAGAAAAGAAGAAAAAGAAGAAAAAAGACAAAGGCGATGGGTGATAGGGCAAAACACGACC
TCCAATGTGATCTCCCCATCAGATACAAGCCGTGTCTGCCCTCACCCCAGTGCATCATGGTTAT
CAAATTCATTCCCTCTAGACATCTTCATTTTTTGCTGTTCTGAGGTTTGCCCTTACTACACCTC
CCTGCCGCAATCTTCATCTTCCAAATTTTGCTTTATTAGTCAAAATATATAATCCAATTAAGAA
AGATGGTGTTTTCTGAAATAAAACCTTTACTAAATATCTAA

hide sequence

RefSeq Acc Id:

XM_017601747 ⟹ XP_017457236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI
Rnor_6.0	20	4,178,656 - 4,235,947 (+)	NCBI

Sequence:

show sequence

CTCACTGCCTTCAGTTAGGGAAATCCTAAGAAGTTAATGGAAAGAGAAGGTTAGTCACGGTGTA
GTCCTGATACAAGCGGCGTGTCCAGCTCGTCTCCGGCCCTCTGTGTAGTCCCTGGGCAGGGCGG
CAGCCCCGCAAAAGCTGCTGCACCACAAAAGCCCTCAAGGCGGCGGCAGGCCTCTCCACACCGC
CCCAGCCTTCGACGCCAAGGAGAGGAAAACTGTCAATATATCGAAAGCACTGAAGTCCCAACAA
AGGAGAGCTTGCAGCCTGAGCTGAGCCTACTTCCCACTGGGCCCAGTTCTTCCACAGGGCTGGC
TGCTTATCCCATGAAACACATCCTCAGACAGTAAGCCTTCAACTCTGAAGGAAAACGTGACTTT
GTGAACATCACATGGGTTTTGTGATAAACTGAGCCATGTGTTGAGTCCAGATGACGTGGAACTT
ACTGGAGCCAATAACCGGAAGATGGCAGACCTCGGCTGTTGACTTCAAAGGTACAGTCCCAGCA
AATCTCTGAAGGTGGATTTGGCAGCAGAATTTCCTCACATTGCCAAGCATCTATAAGGCCCCAG
AAGAAAAATGTCCTTCCTGCAGTTTGGAGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGCC
CTTGCTATTCTGGCTATTCTGATAGCAAGATGGACGCGGCGCAGACATGAGGCGCGAGTCTCCA
GATACACTTCAGAACAGAGTGCTGGGCTTCTGGATCATGAGGATGGTATTTCCCATGGGAGGCA
CAAAAGAGGAAGAGGATCTCGATGCTCGTTTTCATCGGATAGCGGGCCAACTGGTGTTTCTGTA
GGAGGAAACTCAGTCAGTCACCACTCCATGGGAATGTGCAGATCCAATCCTGCTCTATTCCAAG
AACCGCAAACTTCAGGCCAAGGACCAGCAAGTAGAACAAGAAGCTCCAAGTCCTTACACGACCC
TCTAACAGGCAAGACTGGAGAAATCACTGGAACCATTGGACCTATAATGCAGTTCTCCGCACCT
ATCCCTGGAGCTACGGGACCTATCAAACTGTCTCAAAAAACCTTCCTGCAAACTCCTGGCCCTC
TTGTGCAATGTATGGATTCTAGTGGTTATCCACAGCCATCACTGAAGTCTAGCTGTTATCAGCA
ATGTTCAGTCAAGCCTAGCTGCCAACAAGGAATGATGCCTCTCTGCCCTGAGTCGCAGACTTTA
CCCTTATTAATTACACAGAGAACTGGAGCAAGACGTGGACCACCTATAATACTGAAAAAGCATT
CAGGCCAGATGATGAGGCACGGAGGGAGCGTGACCTTCCAGGAAGACAACGGAGACACAATGAA
GTGGAGAAGATGCCAGTGCGAGTTCTGCTGTCCTAAGAGATACGAGTCGCACATGGCCCACCAG
CGACGAGAACCCATATGGTGTGAAGAACCAGCGCCGCAGCAGCAGCAGCAACAGCAGCAGCAGC
AGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCCTACTCCTCCTCCACGAAGACA
AGAATCTCAAGTAAGATTTGACCAAAGAAATGAAAACTGCTATGACGCCCAGACCATTTGTTAT
GAAGAACCATTCCTTTTCAGAAGACTGGAGTCCCTGATAAGGAAGAACCAAGACGGGATAGTAA
TAAAGCAAAATGAAGGCGGCCTCCTGATAAAGAAGGCTGAGGACCACCCATCAGAACACAAAAA
GAAAGGGAAACCCAAGAAGTCATCAGAACCCCAAGACACTGACTCGGATTCAAGTGCACCACCA
AGCTCAGATCAACCTGAAGCAAAACCCGAACCACAACCAGACGAAGGGGAGGAGAAGAAACAAA
AGAAAGAAAAGAAGAAAAAGAAGAAAAAAGACAAAGGCGATGGGTGATAGGGCAAAACACGACC
TCCAATGTGATCTCCCCATCAGATACAAGCCGTGTCTGCCCTCACCCCAGTGCATCATGGTTAT
CAAATTCATTCCCTCTAGACATCTTCATTTTTTGCTGTTCTGAGGTTTGCCCTTACTACACCTC
CCTGCCGCAATCTTCATCTTCCAAATTTTGCTTTATTAGTCAAAATATATAATCCAATTAAGAA
AGATGGTGTTTTCTGAAATAAAACCTTTACTAAATATCTAA

hide sequence

RefSeq Acc Id:

XM_017601751 ⟹ XP_017457240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI
Rnor_6.0	20	4,178,656 - 4,235,947 (+)	NCBI

Sequence:

show sequence

CTCACTGCCTTCAGTTAGGGAAATCCTAAGAAGTTAATGGAAAGAGAAGGTTAGTCACGGTGTA
GTCCTGATACAAGCGGCGTGTCCAGCTCGTCTCCGGCCCTCTGTGTAGTCCCTGGGCAGGGCGG
CAGCCCCGCAAAAGCTGCTGCACCACAAAAGCCCTCAAGGCGGCGGCAGGCCTCTCCACACCGC
CCCAGCCTTCGACGCCAAGGAGAGGAAAACTGTCAATATATCGAAAGCACTGAAGTCCCAACAA
AGGAGAGCTTGCAGCCTGAGCTGAGCCTACTTCCCACTGGGCCCAGTTCTTCCACAGGGCTGGC
TGCTTATCCCATGAAACACATCCTCAGACAGTAAGCCTTCAACTCTGAAGGAAAACGTGACTTT
GTGAACATCACATGGGTTTTGTGATAAACTGAGCCATGTGTTGAGTCCAGATGACGTGGAACTT
ACTGGAGCCAATAACCGGAAGATGGCAGACCTCGGCTGTTGACTTCAAAGGTACAGTCCCAGCA
AATCTCTGAAGGTGGATTTGGCAGCAGAATTTCCTCACATTGCCAAGCATCTATAAGGCCCCAG
AAGAAAAATGTCCTTCCTGCAGTTTGGAGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGCC
CTTGCTATTCTGGCTATTCTGATAGCAAGATGGACGCGGCGCAGACATGAGGCGCGAGTCTCCA
GATACACTTCAGAACAGAGTGCTGGGCTTCTGGATCATGAGGATGGTATTTCCCATGGGAGGCA
CAAAAGAGGAAGAGGATCTCGATGCTCGTTTTCATCGGATAGCGGGCCAACTGGTGTTTCTGTA
GGAGGAAACTCAGTCAGTCACCACTCCATGGGAATGTGCAGATCCAATCCTGCTCTATTCCAAG
AACCGCAAACTTCAGGCCAAGGACCAGCAAGTAGAACAAGAAGCTCCAAGTCCTTACACGACCC
TCTAACAGGCAAGACTGGAGAAATCACTGGAACCATTGGACCTATAATGCAGTTCTCCGCACCT
ATCCCTGGAGCTACGGGACCTATCATGCAAACTCCTGGCCCTCTTGTGCAATGTATGGATTCTA
GTGGTTATCCACAGCCATCACTGAAGTCTAGCTGTTATCAGCAATGTTCAGTCAAGCCTAGCTG
CCAACAAGGAATGATGCCTCTCTGCCCTGAGTCGCAGACTTTACCCTTATTAATTACACAGAGA
ACTGGAGCAAGACGTGGACCACCTATAATACTGAAAAAGCATTCAGGCCAGATGATGAGGCACG
GAGGGAGCGTGACCTTCCAGGAAGACAACGGAGACACAATGAAGTGGAGAAGATGCCAGTGCGA
GTTCTGCTGTCCTAAGAGATACGAGTCGCACATGGCCCACCAGCGACGAGAACCCATATGGTGT
GAAGAACCAGCGCCGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCCACAGCAGCAGC
AGCAGCAGCAGCAGCCTCCTCCTACTCCTCCTCCACGAAGACAAGAATCTCAAGTAAGATTTGA
CCAAAGAAATGAAAACTGCTATGACGCCCAGACCATTTGTTATGAAGAACCATTCCTTTTCAGA
AGACTGGAGTCCCTGATAAGGAAGAACCAAGACGGGATAGTAATAAAGCAAAATGAAGGCGGCC
TCCTGATAAAGAAGGCTGAGGACCACCCATCAGAACACAAAAAGAAAGGGAAACCCAAGAAGTC
ATCAGAACCCCAAGACACTGACTCGGATTCAAGTGCACCACCAAGCTCAGATCAACCTGAAGCA
AAACCCGAACCACAACCAGACGAAGGGGAGGAGAAGAAACAAAAGAAAGAAAAGAAGAAAAAGA
AGAAAAAAGACAAAGGCGATGGGTGATAGGGCAAAACACGACCTCCAATGTGATCTCCCCATCA
GATACAAGCCGTGTCTGCCCTCACCCCAGTGCATCATGGTTATCAAATTCATTCCCTCTAGACA
TCTTCATTTTTTGCTGTTCTGAGGTTTGCCCTTACTACACCTCCCTGCCGCAATCTTCATCTTC
CAAATTTTGCTTTATTAGTCAAAATATATAATCCAATTAAGAAAGATGGTGTTTTCTGAAATAA
AACCTTTACTAAATATCTAA

hide sequence

RefSeq Acc Id:

XM_039098974 ⟹ XP_038954902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098975 ⟹ XP_038954903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098981 ⟹ XP_038954909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098982 ⟹ XP_038954910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,211 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098983 ⟹ XP_038954911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098984 ⟹ XP_038954912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,467,282 (-)	NCBI

RefSeq Acc Id:

XM_039098990 ⟹ XP_038954918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,434,093 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,432,183 (-)	NCBI

RefSeq Acc Id:

XM_039098991 ⟹ XP_038954919

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,434,093 (-)	NCBI
mRatBN7.2	20	4,410,002 - 4,432,183 (-)	NCBI

RefSeq Acc Id:

XM_063279424 ⟹ XP_063135494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279425 ⟹ XP_063135495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279426 ⟹ XP_063135496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279427 ⟹ XP_063135497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279428 ⟹ XP_063135498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279429 ⟹ XP_063135499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,649 (-)	NCBI

RefSeq Acc Id:

XM_063279430 ⟹ XP_063135500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,211 (-)	NCBI

RefSeq Acc Id:

XM_063279431 ⟹ XP_063135501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,209 (-)	NCBI

RefSeq Acc Id:

XM_063279432 ⟹ XP_063135502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279433 ⟹ XP_063135503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279434 ⟹ XP_063135504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279435 ⟹ XP_063135505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,209 (-)	NCBI

RefSeq Acc Id:

XM_063279436 ⟹ XP_063135506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,650 (-)	NCBI

RefSeq Acc Id:

XM_063279437 ⟹ XP_063135507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279438 ⟹ XP_063135508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279439 ⟹ XP_063135509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,212 (-)	NCBI

RefSeq Acc Id:

XM_063279440 ⟹ XP_063135510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,212 (-)	NCBI

RefSeq Acc Id:

XM_063279441 ⟹ XP_063135511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,654 (-)	NCBI

RefSeq Acc Id:

XM_063279442 ⟹ XP_063135512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,212 (-)	NCBI

RefSeq Acc Id:

XM_063279443 ⟹ XP_063135513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,211 (-)	NCBI

RefSeq Acc Id:

XM_063279444 ⟹ XP_063135514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,211 (-)	NCBI

RefSeq Acc Id:

XM_063279445 ⟹ XP_063135515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,650 (-)	NCBI

RefSeq Acc Id:

XM_063279446 ⟹ XP_063135516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279447 ⟹ XP_063135517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,210 (-)	NCBI

RefSeq Acc Id:

XM_063279448 ⟹ XP_063135518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,647 (-)	NCBI

RefSeq Acc Id:

XM_063279449 ⟹ XP_063135519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,459,648 (-)	NCBI

RefSeq Acc Id:

XM_063279450 ⟹ XP_063135520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,456,373 (-)	NCBI

RefSeq Acc Id:

XM_063279451 ⟹ XP_063135521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,456,373 (-)	NCBI

RefSeq Acc Id:

XM_063279452 ⟹ XP_063135522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,211 (-)	NCBI

RefSeq Acc Id:

XM_063279453 ⟹ XP_063135523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,469,213 (-)	NCBI

RefSeq Acc Id:

XM_063279454 ⟹ XP_063135524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,411,926 - 4,428,974 (-)	NCBI

RefSeq Acc Id:

XM_063279455 ⟹ XP_063135525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,427,513 - 4,469,214 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001106654	(Get FASTA)	NCBI Sequence Viewer
	XP_017457232	(Get FASTA)	NCBI Sequence Viewer
	XP_017457235	(Get FASTA)	NCBI Sequence Viewer
	XP_017457236	(Get FASTA)	NCBI Sequence Viewer
	XP_017457240	(Get FASTA)	NCBI Sequence Viewer
	XP_038954902	(Get FASTA)	NCBI Sequence Viewer
	XP_038954903	(Get FASTA)	NCBI Sequence Viewer
	XP_038954909	(Get FASTA)	NCBI Sequence Viewer
	XP_038954910	(Get FASTA)	NCBI Sequence Viewer
	XP_038954911	(Get FASTA)	NCBI Sequence Viewer
	XP_038954912	(Get FASTA)	NCBI Sequence Viewer
	XP_038954918	(Get FASTA)	NCBI Sequence Viewer
	XP_038954919	(Get FASTA)	NCBI Sequence Viewer
	XP_063135494	(Get FASTA)	NCBI Sequence Viewer
	XP_063135495	(Get FASTA)	NCBI Sequence Viewer
	XP_063135496	(Get FASTA)	NCBI Sequence Viewer
	XP_063135497	(Get FASTA)	NCBI Sequence Viewer
	XP_063135498	(Get FASTA)	NCBI Sequence Viewer
	XP_063135499	(Get FASTA)	NCBI Sequence Viewer
	XP_063135500	(Get FASTA)	NCBI Sequence Viewer
	XP_063135501	(Get FASTA)	NCBI Sequence Viewer
	XP_063135502	(Get FASTA)	NCBI Sequence Viewer
	XP_063135503	(Get FASTA)	NCBI Sequence Viewer
	XP_063135504	(Get FASTA)	NCBI Sequence Viewer
	XP_063135505	(Get FASTA)	NCBI Sequence Viewer
	XP_063135506	(Get FASTA)	NCBI Sequence Viewer
	XP_063135507	(Get FASTA)	NCBI Sequence Viewer
	XP_063135508	(Get FASTA)	NCBI Sequence Viewer
	XP_063135509	(Get FASTA)	NCBI Sequence Viewer
	XP_063135510	(Get FASTA)	NCBI Sequence Viewer
	XP_063135511	(Get FASTA)	NCBI Sequence Viewer
	XP_063135512	(Get FASTA)	NCBI Sequence Viewer
	XP_063135513	(Get FASTA)	NCBI Sequence Viewer
	XP_063135514	(Get FASTA)	NCBI Sequence Viewer
	XP_063135515	(Get FASTA)	NCBI Sequence Viewer
	XP_063135516	(Get FASTA)	NCBI Sequence Viewer
	XP_063135517	(Get FASTA)	NCBI Sequence Viewer
	XP_063135518	(Get FASTA)	NCBI Sequence Viewer
	XP_063135519	(Get FASTA)	NCBI Sequence Viewer
	XP_063135520	(Get FASTA)	NCBI Sequence Viewer
	XP_063135521	(Get FASTA)	NCBI Sequence Viewer
	XP_063135522	(Get FASTA)	NCBI Sequence Viewer
	XP_063135523	(Get FASTA)	NCBI Sequence Viewer
	XP_063135524	(Get FASTA)	NCBI Sequence Viewer
	XP_063135525	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97390	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057121
	ENSRNOP00000057121.2
	ENSRNOP00000091548.1

RefSeq Acc Id:

NP_001106654 ⟸ NM_001113183

- UniProtKB:

Q4V8H4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADLEIVLAVILTVLALAILAILIARWTRRRHEARVSRYTSEQSAGLLDHEDGISHGRHKRGRG
SRCSFSSDSAGTIGPIMQFSAPIPGATGPIKLSQKTFLQTPGPLVQCMDSSESCSPEGSNAVMP
MEMCYPQPSLKSSCYQQCSVKPSCQQGMMPLCPESQTLPLLITQRTGVKKHSGQMMRHGGSVTF
QEDNGDTMKWRRCQCEFCCPKRYESHMAHQRREPIWCEEPAPQQQQQQQQQQQQPQQQQQQQQP
PPTPPPRRQESQVRFDQRNENCYDAQTICYEEPFLFRRLESLIRKNQDGIVIKQNEGGLLIKKA
EDHPSEHKKKGKPKKSSEPQDTDSDSSAPPSSDQPEAKPEPQPDEGEEKKQKKEKKKKKKKDKG
DG

hide sequence

RefSeq Acc Id:

XP_017457232 ⟸ XM_017601743

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSFLQFGEIVLAVILTVLALAILAILIARWTRRRHEARVSRYTSEQSAGLLDHEDGISHGRHKR
GRGSRCSFSSDSGPTGVSVGGNSVSHHSMGMCRSNPALFQEPQTSGQGPASRTRSSKSLHDPLT
GKTGEITGTIGPIMQFSAPIPGATGPIKLSQKTFLQTPGPLVQCMDSSAVMPMEMCYPQPSLKS
SCYQQCSVKPSCQQGMMPLCPESQTLPLLITQRTGARRGPPIILKKHSGQMMRHGGSVTFQEDN
GDTMKWRRCQCEFCCPKRYESHMAHQRREPIWCEEPAPQQQQQQQQQQQQPQQQQQQQQPPPTP
PPRRQESQVRFDQRNENCYDAQTICYEEPFLFRRLESLIRKNQDGIVIKQNEGGLLIKKAEDHP
SEHKKKGKPKKSSEPQDTDSDSSAPPSSDQPEAKPEPQPDEGEEKKQKKEKKKKKKKDKGDG

hide sequence

RefSeq Acc Id:

XP_017457236 ⟸ XM_017601747

- Peptide Label:

isoform X7

- Sequence:

show sequence

MSFLQFGEIVLAVILTVLALAILAILIARWTRRRHEARVSRYTSEQSAGLLDHEDGISHGRHKR
GRGSRCSFSSDSGPTGVSVGGNSVSHHSMGMCRSNPALFQEPQTSGQGPASRTRSSKSLHDPLT
GKTGEITGTIGPIMQFSAPIPGATGPIKLSQKTFLQTPGPLVQCMDSSGYPQPSLKSSCYQQCS
VKPSCQQGMMPLCPESQTLPLLITQRTGARRGPPIILKKHSGQMMRHGGSVTFQEDNGDTMKWR
RCQCEFCCPKRYESHMAHQRREPIWCEEPAPQQQQQQQQQQQQPQQQQQQQQPPPTPPPRRQES
QVRFDQRNENCYDAQTICYEEPFLFRRLESLIRKNQDGIVIKQNEGGLLIKKAEDHPSEHKKKG
KPKKSSEPQDTDSDSSAPPSSDQPEAKPEPQPDEGEEKKQKKEKKKKKKKDKGDG

hide sequence

RefSeq Acc Id:

XP_017457235 ⟸ XM_017601746

- Peptide Label:

isoform X9

- Sequence:

show sequence

MSFLQFGEIVLAVILTVLALAILAILIARWTRRRHEARVSRYTSEQSAGLLDHEDGISHGRHKR
GRGSRCSFSSDSGPTGVSVGGNSVSHHSMGMCRSNPALFQEPQTSGQGPASRTRSSKSLHDPLT
GKTGEITGTIGPIMQFSAPIPGATGPIMQTPGPLVQCMDSSAVMPMEMCYPQPSLKSSCYQQCS
VKPSCQQGMMPLCPESQTLPLLITQRTGARRGPPIILKKHSGQMMRHGGSVTFQEDNGDTMKWR
RCQCEFCCPKRYESHMAHQRREPIWCEEPAPQQQQQQQQQQQQPQQQQQQQQPPPTPPPRRQES
QVRFDQRNENCYDAQTICYEEPFLFRRLESLIRKNQDGIVIKQNEGGLLIKKAEDHPSEHKKKG
KPKKSSEPQDTDSDSSAPPSSDQPEAKPEPQPDEGEEKKQKKEKKKKKKKDKGDG

hide sequence

RefSeq Acc Id:

XP_017457240 ⟸ XM_017601751

- Peptide Label:

isoform X18

- Sequence:

show sequence

MSFLQFGEIVLAVILTVLALAILAILIARWTRRRHEARVSRYTSEQSAGLLDHEDGISHGRHKR
GRGSRCSFSSDSGPTGVSVGGNSVSHHSMGMCRSNPALFQEPQTSGQGPASRTRSSKSLHDPLT
GKTGEITGTIGPIMQFSAPIPGATGPIMQTPGPLVQCMDSSGYPQPSLKSSCYQQCSVKPSCQQ
GMMPLCPESQTLPLLITQRTGARRGPPIILKKHSGQMMRHGGSVTFQEDNGDTMKWRRCQCEFC
CPKRYESHMAHQRREPIWCEEPAPQQQQQQQQQQQQPQQQQQQQQPPPTPPPRRQESQVRFDQR
NENCYDAQTICYEEPFLFRRLESLIRKNQDGIVIKQNEGGLLIKKAEDHPSEHKKKGKPKKSSE
PQDTDSDSSAPPSSDQPEAKPEPQPDEGEEKKQKKEKKKKKKKDKGDG

hide sequence

RefSeq Acc Id:

ENSRNOP00000071654 ⟸ ENSRNOT00000080641

RefSeq Acc Id:

ENSRNOP00000068847 ⟸ ENSRNOT00000081438

RefSeq Acc Id:

ENSRNOP00000057121 ⟸ ENSRNOT00000060378

RefSeq Acc Id:	XP_038954912 ⟸ XM_039098984
- Peptide Label:	isoform X34

RefSeq Acc Id:	XP_038954911 ⟸ XM_039098983
- Peptide Label:	isoform X33

RefSeq Acc Id:	XP_038954909 ⟸ XM_039098981
- Peptide Label:	isoform X28

RefSeq Acc Id:	XP_038954910 ⟸ XM_039098982
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_038954903 ⟸ XM_039098975
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038954902 ⟸ XM_039098974
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038954919 ⟸ XM_039098991
- Peptide Label:	isoform X41

RefSeq Acc Id:	XP_038954918 ⟸ XM_039098990
- Peptide Label:	isoform X39

RefSeq Acc Id:	XP_063135523 ⟸ XM_063279453
- Peptide Label:	isoform X38

RefSeq Acc Id:	XP_063135512 ⟸ XM_063279442
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_063135510 ⟸ XM_063279440
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_063135509 ⟸ XM_063279439
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063135514 ⟸ XM_063279444
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_063135513 ⟸ XM_063279443
- Peptide Label:	isoform X25

RefSeq Acc Id:	XP_063135500 ⟸ XM_063279430
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063135522 ⟸ XM_063279452
- Peptide Label:	isoform X37

RefSeq Acc Id:	XP_063135496 ⟸ XM_063279426
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063135517 ⟸ XM_063279447
- Peptide Label:	isoform X31

RefSeq Acc Id:	XP_063135516 ⟸ XM_063279446
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_063135507 ⟸ XM_063279437
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063135504 ⟸ XM_063279434
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063135508 ⟸ XM_063279438
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063135502 ⟸ XM_063279432
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063135498 ⟸ XM_063279428
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063135494 ⟸ XM_063279424
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063135503 ⟸ XM_063279433
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063135495 ⟸ XM_063279425
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063135497 ⟸ XM_063279427
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063135505 ⟸ XM_063279435
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063135501 ⟸ XM_063279431
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063135511 ⟸ XM_063279441
- Peptide Label:	isoform X23

RefSeq Acc Id:	XP_063135515 ⟸ XM_063279445
- Peptide Label:	isoform X27

RefSeq Acc Id:	XP_063135506 ⟸ XM_063279436
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063135499 ⟸ XM_063279429
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063135519 ⟸ XM_063279449
- Peptide Label:	isoform X35

RefSeq Acc Id:	XP_063135518 ⟸ XM_063279448
- Peptide Label:	isoform X32

RefSeq Acc Id:	XP_063135521 ⟸ XM_063279451
- Peptide Label:	isoform X36

RefSeq Acc Id:	XP_063135520 ⟸ XM_063279450
- Peptide Label:	isoform X36

RefSeq Acc Id:	XP_063135524 ⟸ XM_063279454
- Peptide Label:	isoform X40

RefSeq Acc Id:	XP_063135525 ⟸ XM_063279455
- Peptide Label:	isoform X42

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8H4-F1-model_v2	AlphaFold	Q4V8H4	1-386	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701341

Promoter ID:

EPDNEW_R11857

Type:

multiple initiation site

Name:

Tesb_2

Description:

testis specific basic protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11858

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	4,178,675 - 4,178,735	EPDNEW

RGD ID:

13701334

Promoter ID:

EPDNEW_R11858

Type:

multiple initiation site

Name:

Tesb_1

Description:

testis specific basic protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11857

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	4,188,871 - 4,188,931	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1597063	AgrOrtholog
BioCyc Gene	G2FUF-4571	BioCyc
Ensembl Genes	ENSRNOG00000039398	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060378	ENTREZGENE
	ENSRNOT00000060378.4	UniProtKB/TrEMBL
	ENSRNOT00000079194.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7453125	IMAGE-MGC_LOAD
InterPro	C6orf10	UniProtKB/TrEMBL
KEGG Report	rno:414826	UniProtKB/TrEMBL
MGC_CLONE	MGC:114433	IMAGE-MGC_LOAD
NCBI Gene	414826	ENTREZGENE
PANTHER	PTHR14368	UniProtKB/TrEMBL
	TESTIS-EXPRESSED BASIC PROTEIN 1	UniProtKB/TrEMBL
PhenoGen	Tsbp1	PhenoGen
RatGTEx	ENSRNOG00000039398	RatGTEx
UniProt	A0A8I6AFT4_RAT	UniProtKB/TrEMBL
	Q4V8H4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-09-06	Tsbp1	testis expressed basic protein 1	Tesb	testis specific basic protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-10-22	Tesb	testis specific basic protein	Tesb	Tesb pseudogene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	Tesb	Tesb pseudogene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar