Eif4a2-ps2 (eukaryotic translation initiation factor 4A2, pseudogene 2) - Rat Genome Database

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Gene: Eif4a2-ps2 (eukaryotic translation initiation factor 4A2, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Eif4a2-ps2
Name: eukaryotic translation initiation factor 4A2, pseudogene 2
RGD ID: 1597031
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC500607; similar to eukaryotic translation initiation factor 4A2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,463,164 - 20,464,310 (+)NCBIGRCr8
mRatBN7.2614,710,927 - 14,712,015 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.062,980,273 - 2,982,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.062,959,453 - 2,961,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.463,203,712 - 3,205,878 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera614,387,731 - 14,389,553 (+)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Eif4a2-ps2
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat

Markers in Region
RH134436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21177,764,209 - 77,764,390 (+)MAPPERmRatBN7.2
Rnor_6.062,979,116 - 2,979,297NCBIRnor6.0
Rnor_6.01181,373,131 - 81,373,311NCBIRnor6.0
Rnor_5.01184,411,449 - 84,411,629UniSTSRnor5.0
RGSC_v3.41179,950,676 - 79,950,856UniSTSRGSC3.4
Celera1176,636,692 - 76,636,872UniSTS
Celera614,390,529 - 14,390,709UniSTS
Cytogenetic Map6q11UniSTS
Cytogenetic Map11q23UniSTS
RH137715  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,710,884 - 14,711,011 (-)MAPPERmRatBN7.2
Rnor_6.062,981,697 - 2,981,823NCBIRnor6.0
Rnor_5.062,960,857 - 2,960,983UniSTSRnor5.0
RGSC_v3.463,205,794 - 3,205,920UniSTSRGSC3.4
Celera614,388,003 - 14,388,129UniSTS
Cytogenetic Map6q11UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38526 BioCyc
NCBI Gene 500607 ENTREZGENE
PhenoGen Eif4a2-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Eif4a2-ps2  eukaryotic translation initiation factor 4A2, pseudogene 2  LOC500607  similar to eukaryotic translation initiation factor 4A2  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC500607  similar to eukaryotic translation initiation factor 4A2      Symbol and Name status set to provisional 70820 PROVISIONAL