Ndufb4-ps1 (NADH:ubiquinone oxidoreductase subunit B4, pseudogene 1) - Rat Genome Database

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Gene: Ndufb4-ps1 (NADH:ubiquinone oxidoreductase subunit B4, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ndufb4-ps1
Name: NADH:ubiquinone oxidoreductase subunit B4, pseudogene 1
RGD ID: 1596079
Description: Predicted to be located in mitochondrial inner membrane.
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC690428; NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4, pseudogene 1; similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Ndufb4  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87127,622,480 - 127,622,927 (-)NCBIGRCr8
mRatBN7.27125,743,209 - 125,743,656 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx7127,528,567 - 127,529,014 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07129,754,465 - 129,754,912 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07129,655,700 - 129,656,147 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07135,865,914 - 135,866,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07135,522,376 - 135,522,823 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47133,116,570 - 133,116,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7122,132,962 - 122,133,409 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Variants

.
Variants in Ndufb4-ps1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


Sequence


Protein Sequences
Ensembl Protein ENSRNOP00000077304.1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-32298 BioCyc
Ensembl Genes ENSRNOG00000064416 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106641.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_NDUFB4_su UniProtKB/TrEMBL
NCBI Gene 690428 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  NADH-UBIQUINONE OXIDOREDUCTASE B15 SUBUNIT UniProtKB/TrEMBL
Pfam NDUF_B4 UniProtKB/TrEMBL
PhenoGen Ndufb4-ps1 PhenoGen
RatGTEx ENSRNOG00000064416 RatGTEx
UniProt A0A8I5Y7M6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-28 Ndufb4-ps1  NADH:ubiquinone oxidoreductase subunit B4, pseudogene 1  Ndufb4-ps1  NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4, pseudogene 1  Name changed 629549 APPROVED
2009-01-20 Ndufb4-ps1  NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4, pseudogene 1  LOC690428  similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690428  similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa      Symbol and Name status set to provisional 70820 PROVISIONAL