Prrc2b (proline-rich coiled-coil 2B) - Rat Genome Database

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Gene: Prrc2b (proline-rich coiled-coil 2B) Rattus norvegicus
Analyze
Symbol: Prrc2b
Name: proline-rich coiled-coil 2B
RGD ID: 1595906
Description: Predicted to be involved in cell differentiation. Predicted to act upstream of or within in utero embryonic development. Orthologous to human PRRC2B (proline rich coiled-coil 2B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Bat2l; HLA-B associated transcript 2-like; LOC296637; protein BAT2-like 1; similar to HLA-B associated transcript-2 isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,831,017 - 35,916,854 (+)NCBIGRCr8
mRatBN7.2315,433,357 - 15,519,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,465,294 - 15,519,104 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,534,559 - 18,588,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,119,554 - 27,173,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,370,110 - 25,423,957 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,165,687 - 11,252,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,198,401 - 11,248,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,516,495 - 16,601,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,291,980 - 11,347,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,209,828 - 10,263,975 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:22658674   PMID:22681889   PMID:24466597   PMID:27996060  


Genomics

Comparative Map Data
Prrc2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,831,017 - 35,916,854 (+)NCBIGRCr8
mRatBN7.2315,433,357 - 15,519,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,465,294 - 15,519,104 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,534,559 - 18,588,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,119,554 - 27,173,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,370,110 - 25,423,957 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,165,687 - 11,252,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,198,401 - 11,248,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,516,495 - 16,601,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,291,980 - 11,347,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,209,828 - 10,263,975 (+)NCBICelera
Cytogenetic Map3p12NCBI
PRRC2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,373,651 - 131,500,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,373,636 - 131,500,197 (+)EnsemblGRCh38hg38GRCh38
GRCh379134,249,038 - 134,375,580 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,295,298 - 133,365,399 (+)NCBINCBI36Build 36hg18NCBI36
Build 349131,383,478 - 131,405,135NCBI
Celera9104,845,673 - 104,915,750 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,799,970 - 103,870,018 (+)NCBIHuRef
CHM1_19134,454,987 - 134,525,048 (+)NCBICHM1_1
T2T-CHM13v2.09143,583,138 - 143,713,087 (+)NCBIT2T-CHM13v2.0
Prrc2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,041,002 - 32,124,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,041,094 - 32,124,549 (+)EnsemblGRCm39 Ensembl
GRCm38232,151,031 - 32,234,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,151,082 - 32,234,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,006,668 - 32,090,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,973,166 - 32,056,534 (+)NCBIMGSCv36mm8
Celera231,855,341 - 31,938,874 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.05NCBI
Prrc2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,138,292 - 1,183,665 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,137,099 - 1,187,724 (+)NCBIChiLan1.0ChiLan1.0
PRRC2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,855,444 - 7,983,901 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan197,857,780 - 7,986,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,516,585 - 102,622,588 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,138,102 - 131,262,898 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,193,641 - 131,262,894 (+)Ensemblpanpan1.1panPan2
PRRC2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,642,916 - 52,702,203 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,528,970 - 52,702,203 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha951,905,994 - 51,993,363 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,541,288 - 53,629,078 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,536,931 - 53,629,425 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,319,084 - 52,406,351 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,638,033 - 52,725,825 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,732,544 - 52,820,102 (-)NCBIUU_Cfam_GSD_1.0
Prrc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,402,512 - 198,480,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,196,751 - 18,245,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,196,673 - 18,247,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRRC2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,336,818 - 271,430,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,336,780 - 271,430,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,377,250 - 305,439,305 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRRC2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,643,975 - 6,767,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,646,394 - 6,713,044 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,786,670 - 8,915,385 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prrc2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,514,584 - 4,579,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,512,387 - 4,579,759 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Prrc2b
567 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:116
Interacting mature miRNAs:126
Transcripts:ENSRNOT00000013546, ENSRNOT00000066368
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat

Markers in Region
RH128685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,517,946 - 15,518,971 (+)MAPPERmRatBN7.2
Rnor_6.0311,251,244 - 11,252,267NCBIRnor6.0
Rnor_5.0316,600,114 - 16,601,137UniSTSRnor5.0
RGSC_v3.4311,346,004 - 11,347,027UniSTSRGSC3.4
Celera310,262,818 - 10,263,841UniSTS
RH 3.4 Map362.4UniSTS
Cytogenetic Map3p11UniSTS
RH128944  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,517,135 - 15,517,315 (+)MAPPERmRatBN7.2
Rnor_6.0311,250,433 - 11,250,612NCBIRnor6.0
Rnor_5.0316,599,303 - 16,599,482UniSTSRnor5.0
RGSC_v3.4311,345,193 - 11,345,372UniSTSRGSC3.4
Celera310,262,007 - 10,262,186UniSTS
RH 3.4 Map365.7UniSTS
Cytogenetic Map3p11UniSTS
BE120723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,476,434 - 15,476,584 (+)MAPPERmRatBN7.2
Rnor_6.0311,209,730 - 11,209,879NCBIRnor6.0
Rnor_5.0316,558,577 - 16,558,726UniSTSRnor5.0
Celera310,221,288 - 10,221,437UniSTS
RH 3.4 Map361.4UniSTS
Cytogenetic Map3p11UniSTS
RH140765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,512,808 - 15,512,986 (+)MAPPERmRatBN7.2
Rnor_6.0311,246,108 - 11,246,285NCBIRnor6.0
Rnor_5.0316,594,978 - 16,595,155UniSTSRnor5.0
RGSC_v3.4311,340,867 - 11,341,044UniSTSRGSC3.4
Celera310,257,682 - 10,257,859UniSTS
RH 3.4 Map365.2UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 39 44 28 19 28 6 9 74 35 34 11 6
Low 4 13 13 13 2 2 7 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BQ196229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013546   ⟹   ENSRNOP00000013546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,465,299 - 15,519,104 (+)Ensembl
Rnor_6.0 Ensembl311,207,542 - 11,248,469 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066368   ⟹   ENSRNOP00000063117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,465,299 - 15,519,104 (+)Ensembl
Rnor_6.0 Ensembl311,198,401 - 11,248,558 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088576   ⟹   ENSRNOP00000075535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,465,294 - 15,519,060 (+)Ensembl
Rnor_6.0 Ensembl311,198,401 - 11,245,216 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115910   ⟹   ENSRNOP00000086230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,472,957 - 15,519,104 (+)Ensembl
RefSeq Acc Id: NM_001134518   ⟹   NP_001127990
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,863,046 - 35,916,824 (+)NCBI
mRatBN7.2315,465,294 - 15,519,075 (+)NCBI
RefSeq Acc Id: NM_001371270   ⟹   NP_001358199
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,863,051 - 35,916,854 (+)NCBI
mRatBN7.2315,465,299 - 15,519,105 (+)NCBI
RefSeq Acc Id: XM_006234005   ⟹   XP_006234067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,017 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,519,105 (+)NCBI
Rnor_6.0311,165,687 - 11,252,401 (+)NCBI
Rnor_5.0316,516,495 - 16,601,271 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104754   ⟹   XP_038960682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,378 - 35,916,854 (+)NCBI
mRatBN7.2315,433,628 - 15,517,355 (+)NCBI
RefSeq Acc Id: XM_039104755   ⟹   XP_038960683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,017 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,519,105 (+)NCBI
RefSeq Acc Id: XM_039104756   ⟹   XP_038960684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,017 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,519,105 (+)NCBI
RefSeq Acc Id: XM_039104757   ⟹   XP_038960685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,019 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,517,355 (+)NCBI
RefSeq Acc Id: XM_039104758   ⟹   XP_038960686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,019 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,517,359 (+)NCBI
RefSeq Acc Id: XM_039104759   ⟹   XP_038960687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,019 - 35,916,854 (+)NCBI
mRatBN7.2315,433,357 - 15,519,105 (+)NCBI
RefSeq Acc Id: XM_063283492   ⟹   XP_063139562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,017 - 35,916,854 (+)NCBI
RefSeq Acc Id: XM_063283493   ⟹   XP_063139563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,831,019 - 35,916,854 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006234067   ⟸   XM_006234005
- Peptide Label: isoform X1
- UniProtKB: D3ZZ51 (UniProtKB/TrEMBL),   D3ZY45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063117   ⟸   ENSRNOT00000066368
RefSeq Acc Id: ENSRNOP00000013546   ⟸   ENSRNOT00000013546
RefSeq Acc Id: ENSRNOP00000075535   ⟸   ENSRNOT00000088576
RefSeq Acc Id: XP_038960684   ⟸   XM_039104756
- Peptide Label: isoform X3
- UniProtKB: D3ZY45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960683   ⟸   XM_039104755
- Peptide Label: isoform X2
- UniProtKB: D3ZY45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960687   ⟸   XM_039104759
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038960686   ⟸   XM_039104758
- Peptide Label: isoform X6
- UniProtKB: A6JU43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960685   ⟸   XM_039104757
- Peptide Label: isoform X5
- UniProtKB: A0A0G2KAU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960682   ⟸   XM_039104754
- Peptide Label: isoform X1
- UniProtKB: D3ZZ51 (UniProtKB/TrEMBL),   D3ZY45 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001127990   ⟸   NM_001134518
- Peptide Label: isoform 2
- UniProtKB: A6JU43 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001358199   ⟸   NM_001371270
- Peptide Label: isoform 1
- UniProtKB: D3ZY45 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086230   ⟸   ENSRNOT00000115910
RefSeq Acc Id: XP_063139562   ⟸   XM_063283492
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139563   ⟸   XM_063283493
- Peptide Label: isoform X7
Protein Domains
BAT2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZ51-F1-model_v2 AlphaFold D3ZZ51 1-2232 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595906 AgrOrtholog
BioCyc Gene G2FUF-50159 BioCyc
Ensembl Genes ENSRNOG00000010217 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013546 ENTREZGENE
  ENSRNOT00000013546.7 UniProtKB/TrEMBL
  ENSRNOT00000066368.5 UniProtKB/TrEMBL
  ENSRNOT00000088576.2 UniProtKB/TrEMBL
  ENSRNOT00000115910.1 UniProtKB/TrEMBL
InterPro BAT2_N UniProtKB/TrEMBL
  PRRC2 UniProtKB/TrEMBL
NCBI Gene 296637 ENTREZGENE
PANTHER PROTEIN PRRC2B UniProtKB/TrEMBL
  PTHR14038 UniProtKB/TrEMBL
Pfam BAT2_N UniProtKB/TrEMBL
PhenoGen Prrc2b PhenoGen
RatGTEx ENSRNOG00000010217 RatGTEx
UniProt A0A0G2KAU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4X0_RAT UniProtKB/TrEMBL
  A6JU43 ENTREZGENE, UniProtKB/TrEMBL
  D3ZY45 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZ51 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Prrc2b  proline-rich coiled-coil 2B  Bat2l  HLA-B associated transcript 2-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Bat2l  HLA-B associated transcript 2-like  LOC296637  similar to HLA-B associated transcript-2 isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC296637  similar to HLA-B associated transcript-2 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL