Actr2-ps1 (actin related protein 2, pseudogene 1) - Rat Genome Database

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Gene: Actr2-ps1 (actin related protein 2, pseudogene 1) Rattus norvegicus
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Symbol: Actr2-ps1
Name: actin related protein 2, pseudogene 1
RGD ID: 1595890
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC301861; similar to ARP2 actin-related protein 2 homolog (yeast)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81451,684,234 - 51,685,316 (+)NCBIGRCr8
mRatBN7.21447,470,967 - 47,472,050 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01449,507,367 - 49,509,301 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01449,676,453 - 49,678,337 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41451,487,386 - 51,489,219 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1446,756,101 - 46,758,035 (+)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Actr2-ps1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat

Markers in Region
RH125883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21447,470,117 - 47,470,363 (+)MAPPERmRatBN7.2
mRatBN7.21743,640,369 - 43,640,609 (+)MAPPERmRatBN7.2
Rnor_6.01745,715,489 - 45,715,728NCBIRnor6.0
Rnor_6.01449,506,567 - 49,506,812NCBIRnor6.0
Rnor_5.01757,755,181 - 57,755,420UniSTSRnor5.0
Rnor_5.01449,675,603 - 49,675,848UniSTSRnor5.0
RGSC_v3.41451,486,536 - 51,486,781UniSTSRGSC3.4
RGSC_v3.41751,294,750 - 51,294,989UniSTSRGSC3.4
Celera1752,843,695 - 52,843,934UniSTS
Celera1446,755,301 - 46,755,546UniSTS
Cytogenetic Map14q11UniSTS


Expression


Sequence


RefSeq Acc Id: XM_003751364   ⟹   XP_003751412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01449,676,453 - 49,678,337 (+)NCBI
RefSeq Acc Id: XM_003752732   ⟹   XP_003752780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1446,756,151 - 46,758,035 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15674 BioCyc
NCBI Gene 301861 ENTREZGENE
PhenoGen Actr2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Actr2-ps1  actin related protein 2, pseudogene 1  LOC301861  similar to ARP2 actin-related protein 2 homolog (yeast)  Symbol and Name Changed 1299863 APPROVED
2008-05-28 LOC301861  similar to ARP2 actin-related protein 2 homolog (yeast)   LOC301861  similar to ARP2 actin-related protein 2 homolog (yeast) (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2006-11-20 LOC301861  similar to ARP2 actin-related protein 2 homolog (yeast) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL