Stx8-ps2 (Syntaxin 8, pseudogene 2) - Rat Genome Database

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Gene: Stx8-ps2 (Syntaxin 8, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Stx8-ps2
Name: Syntaxin 8, pseudogene 2
RGD ID: 1595807
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical gene supported by NM_031656; LOC366818
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,050,837 - 8,051,603 (-)NCBIGRCr8
mRatBN7.277,399,960 - 7,400,812 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0710,629,402 - 10,630,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0710,800,628 - 10,801,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.478,862,814 - 8,863,525 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera75,801,494 - 5,802,267 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Stx8-ps2
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35072 BioCyc
NCBI Gene 366818 ENTREZGENE
PhenoGen Stx8-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Stx8-ps2  Syntaxin 8, pseudogene 2  LOC366818  hypothetical gene supported by NM_031656  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC366818  hypothetical gene supported by NM_031656      Symbol and Name status set to provisional 70820 PROVISIONAL