Gene: RT1-O2-ps (RT1 class I, locus O2, pseudogene) Rattus norvegicus |
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Analyze |
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Symbol: |
RT1-O2-ps |
Name: |
RT1 class I, locus O2, pseudogene |
RGD ID: |
1595734 |
Description: |
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Type: |
pseudo
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RefSeq Status: |
INFERRED |
Previously known as: |
RT1 class I gene RT1-O2; RT1 class I gene RT1-O2, pseudogene; RT1-O2 |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 20 | 2,634,930 - 2,640,251 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 2,630,110 - 2,635,431 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | UTH_Rnor_SHR_Utx | 20 | 2,715,389 - 2,720,705 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 20 | 2,720,352 - 2,725,668 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 20 | 2,657,525 - 2,662,850 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 20 | 3,135,776 - 3,140,859 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 20 | 5,233,942 - 5,239,025 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 20 | 2,769,952 - 2,778,949 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Cytogenetic Map | 20 | p12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
724519 | Bp144 | Blood pressure QTL 144 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 20 | 1 | 3624629 | Rat | 1354642 | Despr15 | Despair related QTL 15 | | 0.0027 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 20 | 1 | 24159021 | Rat | 1600382 | Edcs3 | Endometrial carcinoma susceptibility QTL3 | 3.5 | 0.003 | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 20 | 1 | 25159026 | Rat | 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | 0.05 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 8694189 | Bw153 | Body weight QTL 153 | 3.13 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 20 | 1 | 29191651 | Rat | 9590275 | Scort15 | Serum corticosterone level QTL 15 | 3.48 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 29191651 | Rat | 7411650 | Foco23 | Food consumption QTL 23 | 20.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 29191651 | Rat | 9590109 | Sffal8 | Serum free fatty acids level QTL 8 | 5.32 | 0.01 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 20 | 1 | 29191651 | Rat | 9589155 | Insul32 | Insulin level QTL 32 | 6.38 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 20 | 1 | 29191651 | Rat | 6893685 | Bw111 | Body weight QTL 111 | 2.7 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 20 | 1 | 32578807 | Rat | 7411668 | Foco32 | Food consumption QTL 32 | 8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 36600972 | Rat | 9590252 | Scort12 | Serum corticosterone level QTL 12 | 20.46 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 36600972 | Rat | 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 20 | 1527842 | 46527842 | Rat | 2306850 | Pia40 | Pristane induced arthritis QTL 40 | | 0.0001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 20 | 1527959 | 5304575 | Rat | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | 0.0024 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 20 | 1530655 | 46530655 | Rat | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 20 | 2606836 | 47606836 | Rat | |
Markers in Region
D20Wox5 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 20 | 2,658,895 - 2,659,158 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 20 | 3,164,315 - 3,164,577 | NCBI | Rnor6.0 | Rnor_6.0 | 20 | 3,142,216 - 3,142,492 | NCBI | Rnor6.0 | Rnor_5.0 | 20 | 5,262,481 - 5,262,743 | UniSTS | Rnor5.0 | Rnor_5.0 | 20 | 5,240,382 - 5,240,658 | UniSTS | Rnor5.0 | RGSC_v3.4 | 20 | 2,780,205 - 2,781,189 | UniSTS | RGSC3.4 | RGSC_v3.4 | 20 | 2,803,012 - 2,804,073 | UniSTS | RGSC3.4 | Celera | 20 | 89,370 - 89,630 | UniSTS | | RH 3.4 Map | 20 | 15.8 | UniSTS | | RH 3.4 Map | 20 | 15.8 | RGD | | RH 2.0 Map | 20 | 0.0 | RGD | | Cytogenetic Map | 20 | p12 | UniSTS | |
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Expression
Sequence
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2009-09-15 |
RT1-O2-ps |
RT1 class I, locus O2, pseudogene |
RT1-O2 |
RT1 class I gene RT1-O2, pseudogene |
Nomenclature updated to reflect human and mouse nomenclature |
1299863 |
APPROVED |
2009-09-14 |
RT1-O2 |
RT1 class I gene RT1-O2, pseudogene |
RT1-O2 |
RT1 class I gene RT1-O2 |
Nomenclature updated to reflect human and mouse nomenclature |
1299863 |
APPROVED |
2006-11-20 |
RT1-O2 |
RT1 class I gene RT1-O2 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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