Nbeal1 (neurobeachin-like 1) - Rat Genome Database

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Gene: Nbeal1 (neurobeachin-like 1) Rattus norvegicus
Analyze
Symbol: Nbeal1
Name: neurobeachin-like 1
RGD ID: 1594799
Description: Predicted to enable protein kinase binding activity. Predicted to be involved in protein localization. Predicted to be active in cytosol and membrane. Orthologous to human NBEAL1 (neurobeachin like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Als2cr16; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16; LOC689240; LOC689253; Nbeal1-ps1; neurobeachin like 1; neurobeachin-like 1, pseudogene 1; neurobeachin-like protein 1; similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16; similar to neurobeachin-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8969,069,326 - 69,237,932 (+)NCBIGRCr8
mRatBN7.2961,575,154 - 61,743,896 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,575,356 - 61,736,750 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0966,951,354 - 67,113,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,952,720 - 67,110,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,764,525 - 66,924,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,715,343 - 58,887,980 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera959,006,993 - 59,166,948 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
membrane  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nbeal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8969,069,326 - 69,237,932 (+)NCBIGRCr8
mRatBN7.2961,575,154 - 61,743,896 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,575,356 - 61,736,750 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0966,951,354 - 67,113,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,952,720 - 67,110,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,764,525 - 66,924,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,715,343 - 58,887,980 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera959,006,993 - 59,166,948 (+)NCBICelera
Cytogenetic Map9q32NCBI
NBEAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382203,014,608 - 203,225,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2203,014,608 - 203,226,378 (+)EnsemblGRCh38hg38GRCh38
GRCh372203,879,598 - 204,089,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,708,718 - 203,790,962 (+)NCBINCBI36Build 36hg18NCBI36
Build 342203,825,978 - 203,908,223NCBI
Celera2197,632,559 - 197,835,669 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,727,171 - 195,930,878 (+)NCBIHuRef
CHM1_12203,886,248 - 204,089,297 (+)NCBICHM1_1
T2T-CHM13v2.02203,493,127 - 203,706,697 (+)NCBIT2T-CHM13v2.0
Nbeal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,217,910 - 60,377,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl160,219,758 - 60,377,487 (+)EnsemblGRCm39 Ensembl
GRCm38160,178,740 - 60,338,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,180,599 - 60,338,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,237,443 - 60,391,549 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36160,125,145 - 60,279,625 (+)NCBIMGSCv36mm8
Celera160,696,452 - 60,850,379 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.46NCBI
Nbeal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545711,671,565 - 11,839,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545711,671,565 - 11,839,357 (-)NCBIChiLan1.0ChiLan1.0
NBEAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,622,900 - 105,831,890 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,637,882 - 105,846,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B90,250,567 - 90,459,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,394,443 - 208,595,862 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,395,950 - 208,594,273 (+)Ensemblpanpan1.1panPan2
NBEAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,895,127 - 12,072,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,895,219 - 12,065,380 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,778,222 - 12,955,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,832,117 - 12,010,152 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,832,227 - 12,004,911 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,788,460 - 11,966,205 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,759,597 - 11,937,333 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,753,569 - 11,931,613 (+)NCBIUU_Cfam_GSD_1.0
Nbeal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303160,074,829 - 160,253,343 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367262,045,191 - 2,224,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367262,045,202 - 2,224,477 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NBEAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,517,304 - 106,680,337 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,516,002 - 106,686,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,963,910 - 118,006,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NBEAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,763,320 - 88,965,040 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1088,764,111 - 88,963,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040110,417,861 - 110,624,638 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nbeal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,176,944 - 13,380,292 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,176,362 - 13,380,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nbeal1
539 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:22
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000023678
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 24 8 16 8 8 8 8 8 13 8 8
Low 3 35 33 33 3 33 2 66 27 28 3
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003754520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023678   ⟹   ENSRNOP00000023678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,588,464 - 61,736,750 (+)Ensembl
Rnor_6.0 Ensembl966,952,720 - 67,110,693 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102004   ⟹   ENSRNOP00000083302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,575,356 - 61,736,750 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117882   ⟹   ENSRNOP00000097079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,575,356 - 61,736,750 (+)Ensembl
RefSeq Acc Id: XM_039084849   ⟹   XP_038940777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,326 - 69,237,932 (+)NCBI
mRatBN7.2961,575,155 - 61,743,896 (+)NCBI
RefSeq Acc Id: XM_039084850   ⟹   XP_038940778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,657 - 69,237,932 (+)NCBI
mRatBN7.2961,575,430 - 61,743,896 (+)NCBI
RefSeq Acc Id: XM_039084851   ⟹   XP_038940779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,327 - 69,237,932 (+)NCBI
mRatBN7.2961,575,155 - 61,743,896 (+)NCBI
RefSeq Acc Id: XM_039084852   ⟹   XP_038940780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,326 - 69,237,932 (+)NCBI
mRatBN7.2961,575,156 - 61,743,896 (+)NCBI
RefSeq Acc Id: XM_039084853   ⟹   XP_038940781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,083,069 - 69,237,932 (+)NCBI
mRatBN7.2961,589,030 - 61,743,896 (+)NCBI
RefSeq Acc Id: XM_063268124   ⟹   XP_063124194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,536 - 69,237,932 (+)NCBI
RefSeq Acc Id: XM_063268125   ⟹   XP_063124195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,682 - 69,237,932 (+)NCBI
RefSeq Acc Id: XM_063268126   ⟹   XP_063124196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,127,381 - 69,237,932 (+)NCBI
RefSeq Acc Id: XR_010055002
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8969,069,326 - 69,200,091 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000023678   ⟸   ENSRNOT00000023678
RefSeq Acc Id: XP_038940777   ⟸   XM_039084849
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT8 (UniProtKB/TrEMBL),   A6IPC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940779   ⟸   XM_039084851
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT8 (UniProtKB/TrEMBL),   A6IPC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940780   ⟸   XM_039084852
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZZR5 (UniProtKB/TrEMBL),   A6IPC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940778   ⟸   XM_039084850
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT8 (UniProtKB/TrEMBL),   A6IPC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940781   ⟸   XM_039084853
- Peptide Label: isoform X3
- UniProtKB: A6IPC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083302   ⟸   ENSRNOT00000102004
RefSeq Acc Id: ENSRNOP00000097079   ⟸   ENSRNOT00000117882
RefSeq Acc Id: XP_063124194   ⟸   XM_063268124
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124195   ⟸   XM_063268125
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124196   ⟸   XM_063268126
- Peptide Label: isoform X4
Protein Domains
BEACH   BEACH-type PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6V0-F1-model_v2 AlphaFold F1M6V0 1-2690 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594799 AgrOrtholog
BioCyc Gene G2FUF-27383 BioCyc
Ensembl Genes ENSRNOG00000021525 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023678.8 UniProtKB/TrEMBL
  ENSRNOT00000102004.1 UniProtKB/TrEMBL
  ENSRNOT00000117882.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  DUF4704 UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 689253 ENTREZGENE
PANTHER BEIGE/BEACH-RELATED UniProtKB/TrEMBL
  NEUROBEACHIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Beach UniProtKB/TrEMBL
  DUF4704 UniProtKB/TrEMBL
  DUF4800 UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
PhenoGen Nbeal1 PhenoGen
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021525 RatGTEx
SMART Beach UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF81837 UniProtKB/TrEMBL
UniProt A0A8I5ZZR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQT8 ENTREZGENE, UniProtKB/TrEMBL
  A6IPC4 ENTREZGENE, UniProtKB/TrEMBL
  F1M6V0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Nbeal1  neurobeachin-like 1  LOC689240  similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16  Data merged from RGD:1594812 737654 PROVISIONAL
2013-03-05 Nbeal1  neurobeachin-like 1  Nbeal1-ps1  neurobeachin-like 1, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Nbeal1  neurobeachin-like 1, pseudogene 1  Nbeal1-ps1  neurobeachin-like 2, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Nbeal1-ps1  neurobeachin-like 2, pseudogene 1  Nbeal1  neurobeachin like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Nbeal1-ps1  neurobeachin-like 1  Nbeal1  neurobeachin-like 1, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Nbeal1-ps1  neurobeachin-like 1, pseudogene 1  Nbeal1-ps1  neurobeachin-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Nbeal1  neurobeachin like 1  LOC689253  similar to neurobeachin-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689240  similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689253  similar to neurobeachin-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL