Tcl1a (Tcl1 family Akt coactivator A) - Rat Genome Database

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Gene: Tcl1a (Tcl1 family Akt coactivator A) Rattus norvegicus
Analyze
Symbol: Tcl1a
Name: Tcl1 family Akt coactivator A
RGD ID: 1594686
Description: Predicted to enable identical protein binding activity; protein kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction and positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within negative regulation of gene expression; regulation of stem cell population maintenance; and somatic stem cell population maintenance. Predicted to be located in several cellular components, including endoplasmic reticulum; nucleus; and ooplasm. Orthologous to human TCL1A (TCL1 family AKT coactivator A); INTERACTS WITH bisphenol A; genistein; vinclozolin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC366723; LOC690575; similar to T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein); T-cell leukemia/lymphoma 1A; T-cell leukemia/lymphoma protein 1A; T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein); T-cell lymphoma breakpoint 1; Tcl1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,889,763 - 129,895,756 (-)NCBIGRCr8
mRatBN7.26124,125,032 - 124,131,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6124,125,032 - 124,131,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6124,254,793 - 124,260,933 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06124,550,061 - 124,556,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,904,588 - 123,910,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,888,768 - 128,894,761 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,888,768 - 128,894,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,085,869 - 138,091,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46129,370,968 - 129,376,961 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16129,376,456 - 129,380,647 (-)NCBI
Celera6121,577,748 - 121,583,741 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell cortex  (ISO)
cytosol  (IEA,ISO)
endoplasmic reticulum  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)
ooplasm  (ISO)
pronucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Abnormalities at 14q32.1 in T cell malignancies involve two oncogenes. Pekarsky Y, etal., Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2949-51.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10983986   PMID:12181493   PMID:16767105   PMID:17938240   PMID:25416956   PMID:28262547  


Genomics

Comparative Map Data
Tcl1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,889,763 - 129,895,756 (-)NCBIGRCr8
mRatBN7.26124,125,032 - 124,131,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6124,125,032 - 124,131,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6124,254,793 - 124,260,933 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06124,550,061 - 124,556,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,904,588 - 123,910,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,888,768 - 128,894,761 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,888,768 - 128,894,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,085,869 - 138,091,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46129,370,968 - 129,376,961 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16129,376,456 - 129,380,647 (-)NCBI
Celera6121,577,748 - 121,583,741 (-)NCBICelera
Cytogenetic Map6q32NCBI
TCL1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381495,709,947 - 95,714,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1495,709,947 - 95,714,196 (-)EnsemblGRCh38hg38GRCh38
GRCh371496,176,284 - 96,180,462 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361495,246,057 - 95,250,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 341495,246,057 - 95,250,201NCBI
Celera1476,232,053 - 76,236,282 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1476,361,876 - 76,366,105 (-)NCBIHuRef
CHM1_11496,114,282 - 96,118,511 (-)NCBICHM1_1
T2T-CHM13v2.01489,941,532 - 89,945,710 (-)NCBIT2T-CHM13v2.0
Tcl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912105,183,012 - 105,188,996 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12105,183,009 - 105,189,052 (-)EnsemblGRCm39 Ensembl
GRCm3812105,216,753 - 105,222,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12105,216,750 - 105,222,793 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712106,454,963 - 106,460,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612105,617,805 - 105,623,761 (-)NCBIMGSCv36mm8
Celera12106,449,260 - 106,455,244 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1255.28NCBI
Tcl1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543816,934,650 - 16,952,926 (+)NCBIChiLan1.0ChiLan1.0
TCL1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21596,865,201 - 96,869,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11496,081,707 - 96,086,417 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01476,339,614 - 76,343,546 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11495,664,120 - 95,667,375 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1495,664,120 - 95,667,375 (-)Ensemblpanpan1.1panPan2
TCL1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha864,109,547 - 64,115,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0864,799,042 - 64,805,003 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1864,473,243 - 64,479,198 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0864,535,078 - 64,541,036 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,858,694 - 64,864,651 (-)NCBIUU_Cfam_GSD_1.0
Tcl1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086409,951,362 - 9,954,489 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936604127,841 - 131,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCL1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,934,948 - 116,939,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,933,785 - 116,939,353 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27124,148,800 - 124,154,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCL1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12473,556,188 - 73,570,376 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2473,566,270 - 73,570,348 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605360,724,929 - 60,738,858 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcl1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247348,111,655 - 8,116,084 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcl1a
54 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:87
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000029346
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium 9
Low 2 19
Below cutoff 1 1 1 1 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029346   ⟹   ENSRNOP00000037374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6124,125,032 - 124,131,025 (-)Ensembl
Rnor_6.0 Ensembl6128,888,768 - 128,894,761 (-)Ensembl
RefSeq Acc Id: NM_001109601   ⟹   NP_001103071
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,889,763 - 129,895,756 (-)NCBI
mRatBN7.26124,125,032 - 124,131,025 (-)NCBI
Rnor_6.06128,888,768 - 128,894,761 (-)NCBI
Rnor_5.06138,085,869 - 138,091,862 (-)NCBI
RGSC_v3.46129,370,968 - 129,376,961 (-)RGD
Celera6121,577,748 - 121,583,741 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001103071 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81817 (Get FASTA)   NCBI Sequence Viewer  
  EDL81818 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037374
  ENSRNOP00000037374.4
Reference Protein Sequences
RefSeq Acc Id: NP_001103071   ⟸   NM_001109601
- UniProtKB: D3ZWG3 (UniProtKB/TrEMBL),   A6JES4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000037374   ⟸   ENSRNOT00000029346

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWG3-F1-model_v2 AlphaFold D3ZWG3 1-112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594686 AgrOrtholog
BioCyc Gene G2FUF-36347 BioCyc
Ensembl Genes ENSRNOG00000025233 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029346 ENTREZGENE
  ENSRNOT00000029346.5 UniProtKB/TrEMBL
Gene3D-CATH 2.40.15.10 UniProtKB/TrEMBL
InterPro TCL1_MTCP1 UniProtKB/TrEMBL
  TCL1_MTCP1_sf UniProtKB/TrEMBL
KEGG Report rno:690575 UniProtKB/TrEMBL
NCBI Gene 690575 ENTREZGENE
PANTHER PTHR14060 UniProtKB/TrEMBL
  T-CELL LEUKEMIA/LYMPHOMA PROTEIN 1A UniProtKB/TrEMBL
Pfam TCL1_MTCP1 UniProtKB/TrEMBL
PhenoGen Tcl1a PhenoGen
RatGTEx ENSRNOG00000025233 RatGTEx
Superfamily-SCOP TCL1_MTCP1 UniProtKB/TrEMBL
UniProt A6JES4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-22 Tcl1a  Tcl1 family Akt coactivator A  Tcl1a  T-cell leukemia/lymphoma 1A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Tcl1a  T-cell leukemia/lymphoma 1A  Tcl1  T-cell lymphoma breakpoint 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tcl1  T-cell lymphoma breakpoint 1  Tcl1  T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 Tcl1  T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)  LOC683950  similar to T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)  Data merged from RGD:1596545 1643240 APPROVED
2007-02-08 Tcl1  T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)  Tcl1_predicted  T-cell lymphoma breakpoint 1 (predicted)  Data merged from RGD:1308348 737654 APPROVED
2006-11-20 LOC690575  similar to T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683950  similar to T-cell leukemia/lymphoma protein 1A (P14 TCL1 protein) (TCL1 oncogene) (TCL-1 protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Tcl1_predicted  T-cell lymphoma breakpoint 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED