Hdac1-ps9 (Histone deacetylase 1, pseudogene 9) - Rat Genome Database

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Gene: Hdac1-ps9 (Histone deacetylase 1, pseudogene 9) Rattus norvegicus
Analyze
Symbol: Hdac1-ps9
Name: Histone deacetylase 1, pseudogene 9
RGD ID: 1594525
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical gene supported by AF321129; LOC360472
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8108,402,103 - 8,404,335 (+)NCBIGRCr8
mRatBN7.2107,894,065 - 7,898,844 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0108,051,590 - 8,054,709 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0106,848,131 - 6,851,007 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4107,921,267 - 7,922,703 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera106,875,832 - 6,878,956 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Hdac1-ps9
60 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_146174
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0106,848,813 - 6,850,499 (+)NCBI
RefSeq Acc Id: XR_146500
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera106,876,520 - 6,878,206 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26075 BioCyc
NCBI Gene 360472 ENTREZGENE
PhenoGen Hdac1-ps9 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hdac1-ps9  Histone deacetylase 1, pseudogene 9  LOC360472  hypothetical gene supported by AF321129  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC360472  hypothetical gene supported by AF321129      Symbol and Name status set to provisional 70820 PROVISIONAL