Gene: Cdk2ap1-ps4 (Cdk2ap1-ps4 pseudogene) Rattus norvegicus |
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Analyze |
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Symbol: |
Cdk2ap1-ps4 |
Name: |
Cdk2ap1-ps4 pseudogene |
RGD ID: |
1594416 |
Description: |
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Type: |
pseudo
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RefSeq Status: |
INFERRED |
Related Functional Gene: |
Cdk2ap1
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 20 | 3,433,600 - 3,434,799 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 3,428,927 - 3,430,126 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | UTH_Rnor_WKY_Bbb_1.0 | 20 | 4,105,089 - 4,106,286 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 20 | 4,647,114 - 4,648,313 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 20 | 6,727,279 - 6,728,478 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 20 | 3,417,189 - 3,417,672 | ENTREZGENE | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Cytogenetic Map | 20 | p12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
QTLs in Region (mRatBN7.2)
724519 | Bp144 | Blood pressure QTL 144 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 20 | 1 | 3624629 | Rat | 1354642 | Despr15 | Despair related QTL 15 | | 0.0027 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 20 | 1 | 24159021 | Rat | 1600382 | Edcs3 | Endometrial carcinoma susceptibility QTL3 | 3.5 | 0.003 | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 20 | 1 | 25159026 | Rat | 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | 0.05 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 8694189 | Bw153 | Body weight QTL 153 | 3.13 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 20 | 1 | 29191651 | Rat | 9590275 | Scort15 | Serum corticosterone level QTL 15 | 3.48 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 29191651 | Rat | 7411650 | Foco23 | Food consumption QTL 23 | 20.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 29191651 | Rat | 9590109 | Sffal8 | Serum free fatty acids level QTL 8 | 5.32 | 0.01 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 20 | 1 | 29191651 | Rat | 9589155 | Insul32 | Insulin level QTL 32 | 6.38 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 20 | 1 | 29191651 | Rat | 6893685 | Bw111 | Body weight QTL 111 | 2.7 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 20 | 1 | 32578807 | Rat | 7411668 | Foco32 | Food consumption QTL 32 | 8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 36600972 | Rat | 9590252 | Scort12 | Serum corticosterone level QTL 12 | 20.46 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 36600972 | Rat | 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 20 | 1527842 | 46527842 | Rat | 2306850 | Pia40 | Pristane induced arthritis QTL 40 | | 0.0001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 20 | 1527959 | 5304575 | Rat | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | 0.0024 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 20 | 1530655 | 46530655 | Rat | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 20 | 2606836 | 47606836 | Rat | 61448 | Ciaa1 | CIA Autoantibody QTL 1 | 30 | 0.001 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 20 | 2646395 | 4597031 | Rat | 61472 | Aia1 | Adjuvant induced arthritis QTL 1 | 18 | 0.001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 20 | 2646395 | 4597031 | Rat | 2317057 | Aia27 | Adjuvant induced arthritis QTL 27 | 2.83 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 20 | 2892597 | 26381954 | Rat | |
Markers in Region
RH141569 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 20 | 3,431,527 - 3,431,707 (-) | MAPPER | mRatBN7.2 | mRatBN7.2 | 20 | 3,431,527 - 3,431,707 (+) | MAPPER | mRatBN7.2 | mRatBN7.2 | 20 | 3,328,575 - 3,328,755 (+) | MAPPER | mRatBN7.2 | mRatBN7.2 | 20 | 3,328,575 - 3,328,755 (-) | MAPPER | mRatBN7.2 | Rnor_6.0 | 20 | 4,649,715 - 4,649,894 | NCBI | Rnor6.0 | Rnor_6.0 | 20 | 5,337,513 - 5,337,692 | NCBI | Rnor6.0 | Rnor_5.0 | 20 | 7,398,574 - 7,398,753 | UniSTS | Rnor5.0 | Rnor_5.0 | 20 | 6,729,880 - 6,730,059 | UniSTS | Rnor5.0 | RGSC_v3.4 | 20 | 3,415,539 - 3,415,718 | UniSTS | RGSC3.4 | RH 3.4 Map | 20 | 51.72 | UniSTS | | Cytogenetic Map | 20 | p12 | UniSTS | |
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AI408317 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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Rnor_5.0 | 20 | 6,729,183 - 6,729,337 | NCBI | Rnor5.0 | RGSC_v3.4 | 20 | 3,416,261 - 3,416,414 | UniSTS | RGSC3.4 | Celera | 20 | 3,620,676 - 3,620,829 | UniSTS | | RH 3.4 Map | 20 | 51.92 | UniSTS | | Cytogenetic Map | 20 | p12 | UniSTS | |
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Expression
Sequence
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2006-11-20 |
Cdk2ap1-ps4 |
Cdk2ap1-ps4 pseudogene |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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