Gene: Nid2-ps16 (nidogen 2, pseudogene 15) Rattus norvegicus
Analyze
Symbol:
Nid2-ps16 (Ensembl: LOC302022)
Name:
nidogen 2, pseudogene 15 (Ensembl:similar to nidogen 2 protein)
RGD ID:
1593261
Description:
Type:
pseudo (Ensembl: protein-coding)
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC302022; LOC108349516; LOC302022; LOC363417; LOC503326; LOC503391; similar to nidogen 2; similar to nidogen 2 protein; similar to Nidogen-2 precursor (NID-2) (Osteonidogen); uncharacterized LOC108349516; uncharacterized protein LOC108349516; uncharacterized protein LOC302022
Related Functional Gene:
Nid2
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 24,770,986 - 24,781,770 (+) NCBI GRCr8 mRatBN7.2 3 4,086,903 - 4,097,689 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 4,086,582 - 4,113,617 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 6,960,397 - 7,398,652 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 15,435,845 - 16,529,799 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 13,742,277 - 14,793,629 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 39,104 - 56,035 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_5.0 12 33,164 - 56,028 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Cytogenetic Map 3 p13 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
QTLs in Region (mRatBN7.2)
70202 Alc19 Alcohol consumption QTL 19 2.5 drinking behavior trait (VT:0001422) ethanol intake volume to total fluid intake volume ratio (CMO:0001591) 3 1 27494778 Rat 631679 Cm10 Cardiac mass QTL 10 7.34 0.0001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 3 1 31158234 Rat 631831 Alc8 Alcohol consumption QTL 8 2.7 consumption behavior trait (VT:0002069) calculated ethanol drink intake rate (CMO:0001615) 3 1 33230976 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) diastolic blood pressure (CMO:0000005) 3 1 33278763 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) systolic blood pressure (CMO:0000004) 3 1 33278763 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) pulse pressure (CMO:0000292) 3 1 33278763 Rat 631545 Bp85 Blood pressure QTL 85 3.1 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 1 33278763 Rat 4889966 Bss95 Bone structure and strength QTL 95 4.4 tibia area (VT:1000281) tibia-fibula cross-sectional area (CMO:0001718) 3 1 36847613 Rat 2312664 Scl62 Serum cholesterol level QTL 62 0.05 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 3 1 38710544 Rat 631568 Bp92 Blood pressure QTL 92 2.2 0.005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 1 39874793 Rat 2290452 Scl56 Serum cholesterol level QTL 56 2.26 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 3 1 91609953 Rat
Expression
Sequence
RefSeq Acc Id:
ENSRNOT00000103997 ⟹ ENSRNOP00000092206
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 4,086,582 - 4,113,617 (+) Ensembl
RefSeq Acc Id:
NR_172213
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 24,770,986 - 24,781,770 (+) NCBI mRatBN7.2 3 4,086,903 - 4,097,689 (+) NCBI
RefSeq Acc Id:
ENSRNOP00000092206 ⟸ ENSRNOT00000103997
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2023-09-19
Nid2-ps16
nidogen 2, pseudogene 15
LOC302022
similar to nidogen 2 protein
Symbol and Name Changed
1299863
APPROVED
2021-03-09
LOC302022
similar to nidogen 2 protein
LOC108349516
uncharacterized LOC108349516
Data merged from RGD:11461805
737654
PROVISIONAL
2016-08-02
LOC108349516
uncharacterized LOC108349516
Symbol and Name status set to provisional
70820
PROVISIONAL
2015-07-29
LOC302022
similar to nidogen 2 protein
LOC503326
similar to nidogen 2
Data merged from RGD:1595653
737654
PROVISIONAL
2015-07-29
LOC302022
similar to nidogen 2 protein
LOC503391
similar to nidogen 2
Data merged from RGD:1595621
737654
PROVISIONAL
2015-07-29
LOC302022
similar to nidogen 2 protein
LOC363417
similar to Nidogen-2 precursor (NID-2) (Osteonidogen)
Data merged from RGD:1589731
737654
PROVISIONAL
2006-11-20
LOC503326
similar to nidogen 2
Symbol and Name status set to provisional
70820
PROVISIONAL
2006-11-20
LOC503391
similar to nidogen 2
Symbol and Name status set to provisional
70820
PROVISIONAL
2006-11-20
LOC302022
similar to nidogen 2 protein
Symbol and Name status set to provisional
70820
PROVISIONAL
2006-11-19
LOC363417
similar to Nidogen-2 precursor (NID-2) (Osteonidogen)
Symbol and Name status set to provisional
70820
PROVISIONAL