Nid2-ps16 (nidogen 2, pseudogene 15) - Rat Genome Database

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Gene: Nid2-ps16 (nidogen 2, pseudogene 15) Rattus norvegicus
Analyze
Symbol: Nid2-ps16 (Ensembl: LOC302022)
Name: nidogen 2, pseudogene 15 (Ensembl:similar to nidogen 2 protein)
RGD ID: 1593261
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC302022; LOC108349516; LOC302022; LOC363417; LOC503326; LOC503391; similar to nidogen 2; similar to nidogen 2 protein; similar to Nidogen-2 precursor (NID-2) (Osteonidogen); uncharacterized LOC108349516; uncharacterized protein LOC108349516; uncharacterized protein LOC302022
Related Functional Gene: Nid2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8324,770,986 - 24,781,770 (+)NCBIGRCr8
mRatBN7.234,086,903 - 4,097,689 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl34,086,582 - 4,113,617 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx36,960,397 - 7,398,652 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0315,435,845 - 16,529,799 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0313,742,277 - 14,793,629 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,104 - 56,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,164 - 56,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

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Variants in Nid2-ps16
48 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000103997   ⟹   ENSRNOP00000092206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl34,086,582 - 4,113,617 (+)Ensembl
RefSeq Acc Id: NR_172213
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8324,770,986 - 24,781,770 (+)NCBI
mRatBN7.234,086,903 - 4,097,689 (+)NCBI
Protein Sequences
GenBank Protein AAI62000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092206.1
RefSeq Acc Id: ENSRNOP00000092206   ⟸   ENSRNOT00000103997

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50594 BioCyc
Ensembl Genes ENSRNOG00000064527 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103997.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9036094 IMAGE-MGC_LOAD
KEGG Report rno:302022 UniProtKB/TrEMBL
MGC_CLONE MGC:187847 IMAGE-MGC_LOAD
NCBI Gene 302022 ENTREZGENE
PhenoGen Nid2-ps16 PhenoGen
RatGTEx ENSRNOG00000064527 RatGTEx
UniProt B1WC46_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Nid2-ps16  nidogen 2, pseudogene 15  LOC302022  similar to nidogen 2 protein  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC302022  similar to nidogen 2 protein  LOC108349516  uncharacterized LOC108349516  Data merged from RGD:11461805 737654 PROVISIONAL
2016-08-02 LOC108349516  uncharacterized LOC108349516      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC503326  similar to nidogen 2  Data merged from RGD:1595653 737654 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC503391  similar to nidogen 2  Data merged from RGD:1595621 737654 PROVISIONAL
2015-07-29 LOC302022  similar to nidogen 2 protein  LOC363417  similar to Nidogen-2 precursor (NID-2) (Osteonidogen)  Data merged from RGD:1589731 737654 PROVISIONAL
2006-11-20 LOC503326  similar to nidogen 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC503391  similar to nidogen 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC302022  similar to nidogen 2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC363417  similar to Nidogen-2 precursor (NID-2) (Osteonidogen)      Symbol and Name status set to provisional 70820 PROVISIONAL