Slc25a15-ps1 (solute carrier family 25 member 15, pseudogene 1) - Rat Genome Database

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Gene: Slc25a15-ps1 (solute carrier family 25 member 15, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Slc25a15-ps1
Name: solute carrier family 25 member 15, pseudogene 1
RGD ID: 1592296
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC689466; similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25 member 15)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X152,228,507 - 152,231,150 (+)NCBIGRCr8
mRatBN7.2X147,183,874 - 147,186,518 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X154,775,067 - 154,777,710 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01150,498,363 - 150,501,006 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X154,699,604 - 154,702,247 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1134,183,850 - 134,186,493 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Slc25a15-ps1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat

Markers in Region
RH130172  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21669,653,419 - 69,653,601 (+)MAPPERmRatBN7.2
mRatBN7.2X147,186,112 - 147,186,283 (-)MAPPERmRatBN7.2
Rnor_6.0X154,775,302 - 154,775,472NCBIRnor6.0
Rnor_6.01674,553,074 - 74,553,255NCBIRnor6.0
Rnor_5.01674,190,246 - 74,190,427UniSTSRnor5.0
Rnor_5.01150,498,598 - 150,498,768UniSTSRnor5.0
RGSC_v3.41674,302,049 - 74,302,230UniSTSRGSC3.4
RGSC_v3.4X154,701,842 - 154,702,012UniSTSRGSC3.4
Celera1134,184,085 - 134,184,255UniSTS
Celera1667,543,459 - 67,543,640UniSTS
Cytogenetic MapXq37UniSTS
Slc25a15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X147,185,942 - 147,186,892 (-)MAPPERmRatBN7.2
Rnor_6.0X154,774,693 - 154,775,642NCBIRnor6.0
Rnor_5.01150,497,989 - 150,498,938UniSTSRnor5.0
Celera1134,183,476 - 134,184,425UniSTS
Cytogenetic MapXq37UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003748896   ⟹   XP_003748944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01150,498,363 - 150,501,006 (-)NCBI
RefSeq Acc Id: XM_003753307   ⟹   XP_003753355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1134,183,850 - 134,186,493 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-743 BioCyc
NCBI Gene 689466 ENTREZGENE
PhenoGen Slc25a15-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Slc25a15-ps1  solute carrier family 25 member 15, pseudogene 1  LOC689466  similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25 member 15)  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC689466  similar to Mitochondrial ornithine transporter 1 (Solute carrier family 25 member 15)      Symbol and Name status set to provisional 70820 PROVISIONAL