Snrpnl2 (small nuclear ribonucleoprotein polypeptide N like 2) - Rat Genome Database

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Gene: Snrpnl2 (small nuclear ribonucleoprotein polypeptide N like 2) Rattus norvegicus
Analyze
Symbol: Snrpnl2 (Ensembl: LOC290428)
Name: small nuclear ribonucleoprotein polypeptide N like 2 (Ensembl:similar to small nuclear ribonucleoparticle-associated protein)
RGD ID: 1592111
Description: Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC290428; similar to small nuclear ribonucleoparticle-associated protein; small nuclear ribonucleoprotein polypeptide N like 1; small nuclear ribonucleoprotein-associated protein N-like; Snrpnl1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81579,601,591 - 79,602,281 (+)NCBIGRCr8
mRatBN7.21573,193,647 - 73,194,285 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1573,193,647 - 73,195,245 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01580,764,952 - 80,765,614 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01584,302,244 - 84,302,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41579,823,368 - 79,824,121 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1572,474,510 - 72,475,172 (+)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Snrpnl2
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156099046873690657Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
724548Niddm55Non-insulin dependent diabetes mellitus QTL 550.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)156832736073699069Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039094081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000109681   ⟹   ENSRNOP00000082773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1573,193,647 - 73,195,245 (+)Ensembl
RefSeq Acc Id: XM_039094081   ⟹   XP_038950009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21573,193,647 - 73,194,285 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000082773.1
Reference Protein Sequences
RefSeq Acc Id: XP_038950009   ⟸   XM_039094081
RefSeq Acc Id: ENSRNOP00000082773   ⟸   ENSRNOT00000109681
Protein Domains
Sm

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12810 BioCyc
Ensembl Genes ENSRNOG00000069095 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000109681.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  snRNP-assoc_SmB/SmN UniProtKB/TrEMBL
NCBI Gene 290428 ENTREZGENE
PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN N UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpnl2 PhenoGen
PIRSF snRNP_SmB/SmN UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000069095 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8I5ZUK1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Snrpnl2  small nuclear ribonucleoprotein polypeptide N like 2  Snrpnl1  small nuclear ribonucleoprotein polypeptide N like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Snrpnl1  small nuclear ribonucleoprotein polypeptide N like 1  LOC290428  similar to small nuclear ribonucleoparticle-associated protein  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC290428  similar to small nuclear ribonucleoparticle-associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL