Kansl1l (KAT8 regulatory NSL complex subunit 1-like) - Rat Genome Database

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Gene: Kansl1l (KAT8 regulatory NSL complex subunit 1-like) Rattus norvegicus
Analyze
Symbol: Kansl1l
Name: KAT8 regulatory NSL complex subunit 1-like
RGD ID: 1590799
Description: Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Orthologous to human KANSL1L (KAT8 regulatory NSL complex subunit 1 like); INTERACTS WITH (+)-schisandrin B; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KAT8 regulatory NSL complex subunit 1-like protein; LOC367289; similar to CG4699-PA, isoform A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,660,865 - 75,766,730 (-)NCBIGRCr8
mRatBN7.2968,211,151 - 68,316,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,211,189 - 68,300,222 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0973,710,959 - 73,819,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,713,430 - 73,799,427 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,490,079 - 73,595,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,490,343 - 65,579,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera965,689,862 - 65,799,639 (-)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
NSL complex  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Kansl1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,660,865 - 75,766,730 (-)NCBIGRCr8
mRatBN7.2968,211,151 - 68,316,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,211,189 - 68,300,222 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0973,710,959 - 73,819,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,713,430 - 73,799,427 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,490,079 - 73,595,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,490,343 - 65,579,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera965,689,862 - 65,799,639 (-)NCBICelera
Cytogenetic Map9q32NCBI
KANSL1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382210,021,421 - 210,172,760 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2210,021,421 - 210,171,409 (-)EnsemblGRCh38hg38GRCh38
GRCh372210,886,145 - 211,036,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,593,680 - 210,744,296 (-)NCBINCBI36Build 36hg18NCBI36
Celera2204,653,461 - 204,804,052 (-)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2202,730,746 - 202,881,291 (-)NCBIHuRef
CHM1_12210,891,610 - 211,042,174 (-)NCBICHM1_1
T2T-CHM13v2.02210,502,126 - 210,653,462 (-)NCBIT2T-CHM13v2.0
Kansl1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,758,402 - 66,856,754 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,758,407 - 66,856,721 (-)EnsemblGRCm39 Ensembl
GRCm38166,719,243 - 66,817,596 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,719,248 - 66,817,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv37166,765,817 - 66,864,169 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36166,652,571 - 66,750,754 (-)NCBIMGSCv36mm8
Celera167,233,059 - 67,332,985 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.61NCBI
Kansl1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,338,509 - 5,423,228 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554575,333,490 - 5,424,632 (+)NCBIChiLan1.0ChiLan1.0
KANSL1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,643,578 - 112,794,716 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,659,101 - 112,810,705 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B97,279,218 - 97,429,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,683,077 - 215,831,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,683,077 - 215,816,666 (-)Ensemblpanpan1.1panPan2
KANSL1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13717,883,992 - 18,013,389 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3717,885,457 - 18,013,634 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3718,764,542 - 18,895,021 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03717,821,859 - 17,952,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3717,821,885 - 17,951,283 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13717,774,750 - 17,905,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,737,056 - 17,867,534 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03717,751,511 - 17,882,351 (-)NCBIUU_Cfam_GSD_1.0
Kansl1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,347,664 - 166,486,474 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936845109,432 - 246,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936845123,713 - 248,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KANSL1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15112,739,256 - 112,916,641 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115112,741,127 - 112,902,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,561,611 - 124,740,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KANSL1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11095,721,081 - 95,869,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1095,718,922 - 95,851,869 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040103,488,362 - 103,634,232 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kansl1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247656,080,327 - 6,204,534 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247656,080,895 - 6,204,780 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kansl1l
485 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:132
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000017257, ENSRNOT00000064708, ENSRNOT00000067589
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat

Markers in Region
D10Chm46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,296,822 - 68,297,046 (+)MAPPERmRatBN7.2
Rnor_6.0973,796,033 - 73,796,256NCBIRnor6.0
Rnor_5.0973,510,107 - 73,510,330UniSTSRnor5.0
RGSC_v3.4965,576,104 - 65,576,327UniSTSRGSC3.4
Celera965,776,385 - 65,776,608UniSTS
Cytogenetic Map9q32UniSTS
RH142525  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,227,403 - 68,227,551 (+)MAPPERmRatBN7.2
Rnor_6.0973,727,674 - 73,727,821NCBIRnor6.0
Rnor_5.0973,578,796 - 73,578,943UniSTSRnor5.0
RGSC_v3.4965,506,192 - 65,506,339UniSTSRGSC3.4
Celera965,706,576 - 65,706,723UniSTS
RH 3.4 Map9596.0UniSTS
Cytogenetic Map9q32UniSTS
BF397850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,214,303 - 68,214,425 (+)MAPPERmRatBN7.2
Rnor_6.0973,714,574 - 73,714,695NCBIRnor6.0
Rnor_5.0973,591,922 - 73,592,043UniSTSRnor5.0
RGSC_v3.4965,493,209 - 65,493,330UniSTSRGSC3.4
Celera965,693,476 - 65,693,597UniSTS
RH 3.4 Map9596.7UniSTS
Cytogenetic Map9q32UniSTS
RH140448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,210,879 - 68,211,078 (+)MAPPERmRatBN7.2
Rnor_6.0973,711,150 - 73,711,348NCBIRnor6.0
Rnor_5.0973,595,269 - 73,595,467UniSTSRnor5.0
RGSC_v3.4965,489,785 - 65,489,983UniSTSRGSC3.4
Celera965,690,053 - 65,690,251UniSTS
RH 3.4 Map9615.29UniSTS
Cytogenetic Map9q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 23 7 16 7 8 8 53 35 41 11 8
Low 3 35 34 34 3 34 3 21
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003750709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_346058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000067589   ⟹   ENSRNOP00000063526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,211,189 - 68,300,222 (-)Ensembl
Rnor_6.0 Ensembl973,713,430 - 73,799,427 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104321   ⟹   ENSRNOP00000083738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,211,189 - 68,300,222 (-)Ensembl
RefSeq Acc Id: XM_003750709   ⟹   XP_003750757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,729 (-)NCBI
mRatBN7.2968,211,151 - 68,316,967 (-)NCBI
Rnor_6.0973,710,959 - 73,816,214 (-)NCBI
Rnor_5.0973,490,079 - 73,595,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245110   ⟹   XP_006245172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,728 (-)NCBI
mRatBN7.2968,211,151 - 68,316,965 (-)NCBI
Rnor_6.0973,710,959 - 73,816,214 (-)NCBI
Rnor_5.0973,490,079 - 73,595,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084612   ⟹   XP_038940540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,729 (-)NCBI
mRatBN7.2968,211,151 - 68,316,967 (-)NCBI
RefSeq Acc Id: XM_039084615   ⟹   XP_038940543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,728 (-)NCBI
mRatBN7.2968,211,151 - 68,316,965 (-)NCBI
RefSeq Acc Id: XM_039084617   ⟹   XP_038940545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,730 (-)NCBI
mRatBN7.2968,211,151 - 68,316,969 (-)NCBI
RefSeq Acc Id: XM_039084623   ⟹   XP_038940551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,728 (-)NCBI
mRatBN7.2968,211,151 - 68,316,964 (-)NCBI
RefSeq Acc Id: XM_039084625   ⟹   XP_038940553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,728 (-)NCBI
mRatBN7.2968,211,151 - 68,316,964 (-)NCBI
RefSeq Acc Id: XM_063268142   ⟹   XP_063124212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,729 (-)NCBI
RefSeq Acc Id: XM_063268143   ⟹   XP_063124213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,185 (-)NCBI
RefSeq Acc Id: XM_063268144   ⟹   XP_063124214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,083 (-)NCBI
RefSeq Acc Id: XM_063268145   ⟹   XP_063124215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,756,265 (-)NCBI
RefSeq Acc Id: XM_063268146   ⟹   XP_063124216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,083 (-)NCBI
RefSeq Acc Id: XM_063268147   ⟹   XP_063124217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,729 (-)NCBI
RefSeq Acc Id: XM_063268148   ⟹   XP_063124218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,730 (-)NCBI
RefSeq Acc Id: XM_063268149   ⟹   XP_063124219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,728 (-)NCBI
RefSeq Acc Id: XM_063268150   ⟹   XP_063124220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,729 (-)NCBI
RefSeq Acc Id: XM_063268151   ⟹   XP_063124221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,756,263 (-)NCBI
RefSeq Acc Id: XM_063268152   ⟹   XP_063124222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,662,794 - 75,766,730 (-)NCBI
RefSeq Acc Id: XM_063268153   ⟹   XP_063124223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,682,644 - 75,766,727 (-)NCBI
RefSeq Acc Id: XM_063268154   ⟹   XP_063124224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,682,644 - 75,766,155 (-)NCBI
RefSeq Acc Id: XM_063268155   ⟹   XP_063124225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,702,693 - 75,766,728 (-)NCBI
RefSeq Acc Id: XM_063268156   ⟹   XP_063124226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,678,783 - 75,766,728 (-)NCBI
RefSeq Acc Id: XM_346058   ⟹   XP_346059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,660,865 - 75,766,727 (-)NCBI
mRatBN7.2968,211,151 - 68,316,962 (-)NCBI
Rnor_6.0973,710,959 - 73,816,213 (-)NCBI
Rnor_5.0973,490,079 - 73,595,265 (+)NCBI
RGSC_v3.4965,490,343 - 65,579,472 (-)RGD
Sequence:
RefSeq Acc Id: XR_010055014
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,662,326 - 75,766,730 (-)NCBI
RefSeq Acc Id: XR_010055015
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,676,404 - 75,766,727 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003750757 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245172 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940540 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940543 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940545 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940551 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940553 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124212 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124213 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124215 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124216 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124217 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124219 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124220 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124221 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124222 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124223 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124224 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124226 (Get FASTA)   NCBI Sequence Viewer  
  XP_346059 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75293 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063526
  ENSRNOP00000063526.3
  ENSRNOP00000083738
  ENSRNOP00000083738.1
RefSeq Acc Id: XP_346059   ⟸   XM_346058
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GB36 (UniProtKB/TrEMBL),   A6KFD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003750757   ⟸   XM_003750709
- Peptide Label: isoform X7
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245172   ⟸   XM_006245110
- Peptide Label: isoform X3
- UniProtKB: D3ZZY7 (UniProtKB/TrEMBL),   A6KFD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063526   ⟸   ENSRNOT00000067589
RefSeq Acc Id: XP_038940545   ⟸   XM_039084617
- Peptide Label: isoform X6
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940540   ⟸   XM_039084612
- Peptide Label: isoform X1
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940543   ⟸   XM_039084615
- Peptide Label: isoform X4
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940553   ⟸   XM_039084625
- Peptide Label: isoform X13
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940551   ⟸   XM_039084623
- Peptide Label: isoform X11
- UniProtKB: A6KFD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083738   ⟸   ENSRNOT00000104321
RefSeq Acc Id: XP_063124218   ⟸   XM_063268148
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124212   ⟸   XM_063268142
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124220   ⟸   XM_063268150
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063124217   ⟸   XM_063268147
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063124219   ⟸   XM_063268149
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063124213   ⟸   XM_063268143
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124216   ⟸   XM_063268146
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124214   ⟸   XM_063268144
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124215   ⟸   XM_063268145
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124221   ⟸   XM_063268151
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063124222   ⟸   XM_063268152
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063124226   ⟸   XM_063268156
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063124223   ⟸   XM_063268153
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063124224   ⟸   XM_063268154
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063124225   ⟸   XM_063268155
- Peptide Label: isoform X15
Protein Domains
PEHE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZY7-F1-model_v2 AlphaFold D3ZZY7 1-915 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590799 AgrOrtholog
BioCyc Gene G2FUF-27290 BioCyc
Ensembl Genes ENSRNOG00000028149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067589.4 UniProtKB/TrEMBL
  ENSRNOT00000104321.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.3170 UniProtKB/TrEMBL
InterPro NSL1 UniProtKB/TrEMBL
  PEHE_dom UniProtKB/TrEMBL
NCBI Gene 367289 ENTREZGENE
PANTHER KAT8 REGULATORY NSL COMPLEX SUBUNIT 1-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR22443 UniProtKB/TrEMBL
Pfam PEHE UniProtKB/TrEMBL
PhenoGen Kansl1l PhenoGen
RatGTEx ENSRNOG00000028149 RatGTEx
SMART PEHE UniProtKB/TrEMBL
UniProt A0A8I6GB36 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZY7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-18 Kansl1l  KAT8 regulatory NSL complex subunit 1-like  LOC367289  similar to CG4699-PA, isoform A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC367289  similar to CG4699-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL