Rpl14l2 (ribosomal protein L14 like 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpl14l2 (ribosomal protein L14 like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl14l2 (Ensembl: LOC680579)
Name: ribosomal protein L14 like 2 (Ensembl:similar to ribosomal protein L14)
RGD ID: 1590581
Description: Predicted to be involved in translation. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL14 (ribosomal protein L14).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L14-like; AABR07014996.1; large ribosomal subunit protein eL14-like; LOC680579; ribosomal protein L14 like 1; Rpl14l1; similar to ribosomal protein L14
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81442,947,085 - 42,949,752 (-)NCBIGRCr8
mRatBN7.21442,594,039 - 42,594,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,594,039 - 42,594,665 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01444,224,567 - 44,226,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,225,087 - 44,225,713 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01444,044,687 - 44,045,424 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,284,854 - 45,285,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1441,744,584 - 41,746,226 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl14l2
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000049161   ⟹   ENSRNOP00000060476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,594,039 - 42,594,665 (-)Ensembl
RefSeq Acc Id: XM_063273825   ⟹   XP_063129895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81442,947,085 - 42,949,752 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063129895 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060476.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000060476   ⟸   ENSRNOT00000049161
RefSeq Acc Id: XP_063129895   ⟸   XM_063273825
Protein Domains
Large ribosomal subunit protein eL14

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHE6-F1-model_v2 AlphaFold D3ZHE6 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590581 AgrOrtholog
BioCyc Gene G2FUF-15750 BioCyc
Ensembl Genes ENSRNOG00000032160 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049161.4 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
  6.10.250.2270 UniProtKB/TrEMBL
InterPro Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L14e_dom UniProtKB/TrEMBL
  Ribosomal_protein_L14 UniProtKB/TrEMBL
  RPL14_KOW UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 680579 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L14 UniProtKB/TrEMBL
  PTHR11127 UniProtKB/TrEMBL
Pfam Ribosomal_L14e UniProtKB/TrEMBL
PhenoGen Rpl14l2 PhenoGen
RatGTEx ENSRNOG00000032160 RatGTEx
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt D3ZHE6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl14l2  ribosomal protein L14 like 2  Rpl14l1  ribosomal protein L14 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl14l1  ribosomal protein L14 like 1  LOC680579  similar to ribosomal protein L14  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC680579  similar to ribosomal protein L14  AABR07014996.1    Data merged from RGD:15003936 737654 PROVISIONAL
2019-11-08 AABR07014996.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-01-09 LOC680579  similar to ribosomal protein L14  LOC686540  similar to ribosomal protein L14  Data merged from RGD:1596358 1643240 APPROVED
2006-11-20 LOC680579  similar to ribosomal protein L14      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686540  similar to ribosomal protein L14      Symbol and Name status set to provisional 70820 PROVISIONAL