Samt1 (spermatogenesis associated multipass transmembrane protein 1) - Rat Genome Database

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Gene: Samt1 (spermatogenesis associated multipass transmembrane protein 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Samt1 (Ensembl: LOC685789)
Name: spermatogenesis associated multipass transmembrane protein 1 (Ensembl:hypothetical protein LOC685789)
RGD ID: 1590179
Description: Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC685789; LOC685789; uncharacterized protein LOC685789; uncharacterized protein Samt1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X26,362,766 - 26,427,634 (-)NCBIGRCr8
mRatBN7.2X22,866,302 - 22,922,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX22,866,303 - 22,931,169 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X22,681,975 - 22,749,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX22,674,759 - 22,737,523 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X23,103,890 - 23,159,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X43,393,375 - 43,396,142 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX23,240,566 - 23,297,039 (-)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Samt1
295 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:13
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000004683
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low
Below cutoff 1 1 1 2 3 2 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004683   ⟹   ENSRNOP00000004683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX22,866,303 - 22,931,169 (-)Ensembl
Rnor_6.0 EnsemblX22,674,759 - 22,737,523 (+)Ensembl
RefSeq Acc Id: XM_006256812   ⟹   XP_006256874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X26,362,766 - 26,427,634 (-)NCBI
mRatBN7.2X22,866,302 - 22,922,946 (-)NCBI
Rnor_6.0X22,681,975 - 22,737,523 (+)NCBI
Rnor_5.0X23,103,890 - 23,159,259 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602281   ⟹   XP_017457770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X26,362,766 - 26,366,145 (-)NCBI
mRatBN7.2X22,866,302 - 22,869,669 (-)NCBI
Rnor_6.0X22,734,164 - 22,737,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063280347   ⟹   XP_063136417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X26,362,766 - 26,366,144 (-)NCBI
Protein Sequences
Protein RefSeqs XP_006256874 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136417 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004683
  ENSRNOP00000004683.5
Reference Protein Sequences
RefSeq Acc Id: XP_006256874   ⟸   XM_006256812
- UniProtKB: D3ZSG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457770   ⟸   XM_017602281
- UniProtKB: D3ZSG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004683   ⟸   ENSRNOT00000004683
RefSeq Acc Id: XP_063136417   ⟸   XM_063280347
- UniProtKB: D3ZSG7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSG7-F1-model_v2 AlphaFold D3ZSG7 1-233 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590179 AgrOrtholog
BioCyc Gene G2FUF-2695 BioCyc
Ensembl Genes ENSRNOG00000003531 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004683.7 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
KEGG Report rno:685789 UniProtKB/TrEMBL
NCBI Gene 685789 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED MULTIPASS TRANSMEMBRANE PROTEIN 1-RELATED UniProtKB/TrEMBL
PhenoGen Samt1 PhenoGen
RatGTEx ENSRNOG00000003531 RatGTEx
UniProt D3ZSG7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Samt1  spermatogenesis associated multipass transmembrane protein 1  LOC685789  hypothetical protein LOC685789  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC685789  hypothetical protein LOC685789  LOC100364114  hypothetical protein LOC100364114  Data merged from RGD:2321643 1643240 APPROVED
2010-05-06 LOC100364114  hypothetical protein LOC100364114      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685789  hypothetical protein LOC685789  LOC498121  similar to queuine tRNA-ribosyltransferase domain containing 1  Data merged from RGD:1595718 1643240 APPROVED
2006-11-20 LOC685789  hypothetical protein LOC685789      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC498121  similar to queuine tRNA-ribosyltransferase domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL