Aspscr1 (ASPSCR1 tether for SLC2A4, UBX domain containing) - Rat Genome Database

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Gene: Aspscr1 (ASPSCR1 tether for SLC2A4, UBX domain containing) Rattus norvegicus
Analyze
Symbol: Aspscr1
Name: ASPSCR1 tether for SLC2A4, UBX domain containing
RGD ID: 1588666
Description: Predicted to be involved in glucose homeostasis; intracellular protein transport; and positive regulation of protein modification process. Predicted to act upstream of or within regulation of glucose import. Predicted to be located in several cellular components, including cytoplasmic side of plasma membrane; nucleoplasm; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm; nucleus; and vesicle membrane. Human ortholog(s) of this gene implicated in alveolar soft part sarcoma. Orthologous to human ASPSCR1 (ASPSCR1 tether for SLC2A4, UBX domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alveolar soft part sarcoma chromosome region, candidate 1; alveolar soft part sarcoma chromosome region, candidate 1 (human); ASPSCR1, UBX domain containing tether for SLC2A4; LOC691026; MGC187913; similar to alveolar soft part sarcoma chromosome region, candidate 1 long isoform; tether containing UBX domain for GLUT4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,450,600 - 106,488,231 (+)NCBIGRCr8
mRatBN7.210105,952,215 - 105,990,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,952,227 - 105,989,904 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,055,948 - 111,093,882 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,518,989 - 110,556,919 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,872,724 - 105,910,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,851,407 - 109,889,339 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,851,854 - 109,888,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,444,122 - 109,481,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,066,265 - 110,099,230 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10104,495,310 - 104,534,083 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14562105   PMID:23349634  


Genomics

Comparative Map Data
Aspscr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,450,600 - 106,488,231 (+)NCBIGRCr8
mRatBN7.210105,952,215 - 105,990,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,952,227 - 105,989,904 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,055,948 - 111,093,882 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,518,989 - 110,556,919 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,872,724 - 105,910,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,851,407 - 109,889,339 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,851,854 - 109,888,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,444,122 - 109,481,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,066,265 - 110,099,230 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10104,495,310 - 104,534,083 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
ASPSCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,977,629 - 82,017,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,976,807 - 82,017,406 (+)EnsemblGRCh38hg38GRCh38
GRCh371779,935,505 - 79,975,282 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,528,715 - 77,568,571 (+)NCBINCBI36Build 36hg18NCBI36
Build 341777,528,714 - 77,568,569NCBI
Celera1776,539,749 - 76,571,790 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,336,038 - 75,375,521 (+)NCBIHuRef
CHM1_11780,021,461 - 80,061,370 (+)NCBICHM1_1
T2T-CHM13v2.01782,844,788 - 82,884,565 (+)NCBIT2T-CHM13v2.0
Aspscr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,563,878 - 120,600,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,563,799 - 120,600,273 (+)EnsemblGRCm39 Ensembl
GRCm3811120,672,973 - 120,709,447 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,672,973 - 120,709,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711120,534,287 - 120,570,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,489,129 - 120,525,537 (+)NCBIMGSCv36mm8
Celera11132,408,410 - 132,444,905 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.41NCBI
Aspscr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,152,790 - 1,193,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,152,790 - 1,193,826 (-)NCBIChiLan1.0ChiLan1.0
ASPSCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,511,356 - 98,552,691 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,412,215 - 103,453,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,381,000 - 76,422,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,084,873 - 82,127,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,084,873 - 82,127,492 (+)Ensemblpanpan1.1panPan2
ASPSCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19308,017 - 331,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9307,028 - 331,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9910,273 - 933,342 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09901,494 - 924,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9901,498 - 967,747 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19926,660 - 949,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,053,349 - 1,076,382 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,131,917 - 1,155,006 (-)NCBIUU_Cfam_GSD_1.0
Aspscr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602895,637 - 933,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,478,926 - 5,516,646 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,478,947 - 5,516,320 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASPSCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12995,772 - 1,021,937 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112995,688 - 1,021,932 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ASPSCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,841,760 - 73,904,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,862,789 - 73,904,074 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,326,207 - 45,371,417 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aspscr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,813,623 - 10,850,883 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,813,518 - 10,850,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aspscr1
127 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:71
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000054944
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat

Markers in Region
RH133551  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,989,589 - 105,989,898 (+)MAPPERmRatBN7.2
Rnor_6.010109,889,025 - 109,889,333NCBIRnor6.0
Rnor_5.010109,480,903 - 109,481,211UniSTSRnor5.0
Celera10104,533,769 - 104,534,077UniSTS
Cytogenetic Map10q32.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 1 4 74 35 41 11 1
Low 8 7 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000054944   ⟹   ENSRNOP00000051827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,989,188 (+)Ensembl
Rnor_6.0 Ensembl10109,852,036 - 109,888,623 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087005   ⟹   ENSRNOP00000069858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,989,188 (+)Ensembl
Rnor_6.0 Ensembl10109,851,854 - 109,883,821 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096635   ⟹   ENSRNOP00000079360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,986,248 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097054   ⟹   ENSRNOP00000086050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,989,898 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101482   ⟹   ENSRNOP00000095380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,273 - 105,989,900 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106844   ⟹   ENSRNOP00000088273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,989,904 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111289   ⟹   ENSRNOP00000083934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,952,227 - 105,989,904 (+)Ensembl
RefSeq Acc Id: NM_001398979   ⟹   NP_001385908
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,450,600 - 106,488,231 (+)NCBI
mRatBN7.210105,952,273 - 105,989,904 (+)NCBI
RefSeq Acc Id: XM_063269895   ⟹   XP_063125965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,450,924 - 106,488,231 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000069858   ⟸   ENSRNOT00000087005
RefSeq Acc Id: ENSRNOP00000051827   ⟸   ENSRNOT00000054944
RefSeq Acc Id: ENSRNOP00000088273   ⟸   ENSRNOT00000106844
RefSeq Acc Id: ENSRNOP00000086050   ⟸   ENSRNOT00000097054
RefSeq Acc Id: ENSRNOP00000079360   ⟸   ENSRNOT00000096635
RefSeq Acc Id: ENSRNOP00000095380   ⟸   ENSRNOT00000101482
RefSeq Acc Id: ENSRNOP00000083934   ⟸   ENSRNOT00000111289
RefSeq Acc Id: NP_001385908   ⟸   NM_001398979
- UniProtKB: A0A8I6A665 (UniProtKB/TrEMBL),   A6HLH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125965   ⟸   XM_063269895
- Peptide Label: isoform X1
Protein Domains
TUG ubiquitin-like   UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LR71-F1-model_v2 AlphaFold F1LR71 1-466 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697982
Promoter ID:EPDNEW_R8498
Type:initiation region
Name:Aspscr1_1
Description:ASPSCR1, UBX domain containing tether for SLC2A4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010109,852,019 - 109,852,079EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588666 AgrOrtholog
BioCyc Gene G2FUF-22397 BioCyc
Ensembl Genes ENSRNOG00000036678 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054944.5 UniProtKB/TrEMBL
  ENSRNOT00000087005.2 UniProtKB/TrEMBL
  ENSRNOT00000096635.1 UniProtKB/TrEMBL
  ENSRNOT00000097054.1 UniProtKB/TrEMBL
  ENSRNOT00000101482.1 UniProtKB/TrEMBL
  ENSRNOT00000106844 ENTREZGENE
  ENSRNOT00000106844.1 UniProtKB/TrEMBL
  ENSRNOT00000111289.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9099544 IMAGE-MGC_LOAD
InterPro TUG UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  UBX_dom UniProtKB/TrEMBL
MGC_CLONE MGC:187913 IMAGE-MGC_LOAD
NCBI Gene 691026 ENTREZGENE
PANTHER TETHER CONTAINING UBX DOMAIN FOR GLUT4 UniProtKB/TrEMBL
  TETHER CONTAINING UBX DOMAIN FOR GLUT4 UniProtKB/TrEMBL
Pfam TUG UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PhenoGen Aspscr1 PhenoGen
PROSITE UBX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036678 RatGTEx
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2JWF4_RAT UniProtKB/TrEMBL
  A0A8I5ZMJ8_RAT UniProtKB/TrEMBL
  A0A8I5ZW80_RAT UniProtKB/TrEMBL
  A0A8I6A2X4_RAT UniProtKB/TrEMBL
  A0A8I6A665 ENTREZGENE, UniProtKB/TrEMBL
  A6HLH6 ENTREZGENE, UniProtKB/TrEMBL
  B1WC71_RAT UniProtKB/TrEMBL
  F1LR71_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-01 Aspscr1  ASPSCR1 tether for SLC2A4, UBX domain containing  Aspscr1  ASPSCR1, UBX domain containing tether for SLC2A4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-11 Aspscr1  ASPSCR1, UBX domain containing tether for SLC2A4  Aspscr1  alveolar soft part sarcoma chromosome region, candidate 1 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Aspscr1  alveolar soft part sarcoma chromosome region, candidate 1 (human)  Aspscr1  alveolar soft part sarcoma chromosome region, candidate 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Aspscr1  alveolar soft part sarcoma chromosome region, candidate 1  LOC691026  similar to alveolar soft part sarcoma chromosome region, candidate 1 long isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC691026  similar to alveolar soft part sarcoma chromosome region, candidate 1 long isoform      Symbol and Name status set to provisional 70820 PROVISIONAL