LOC493584 (HN1-like pseudogene) - Rat Genome Database

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Gene: LOC493584 (HN1-like pseudogene) Rattus norvegicus
Analyze
Symbol: LOC493584
Name: HN1-like pseudogene
RGD ID: 1588454
Description:
Type: pseudo
RefSeq Status: INFERRED
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814,056,839 - 4,059,457 (-)NCBIGRCr8
mRatBN7.212,236,456 - 2,239,074 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx11,886,316 - 1,888,934 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.017,886,718 - 7,889,336 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012,168,423 - 2,171,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.011,860,115 - 1,862,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013,556,872 - 3,559,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.412,428,792 - 2,431,610 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1785,245 - 787,863 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC493584
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat

Markers in Region
RH135174  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212,236,558 - 2,236,730 (+)MAPPERmRatBN7.2
mRatBN7.21013,963,333 - 13,963,513 (+)MAPPERmRatBN7.2
Rnor_6.01014,304,307 - 14,304,486NCBIRnor6.0
Rnor_6.011,860,218 - 1,860,389NCBIRnor6.0
Rnor_5.01014,120,323 - 14,120,502UniSTSRnor5.0
Rnor_5.013,556,975 - 3,557,146UniSTSRnor5.0
RGSC_v3.41014,191,417 - 14,191,596UniSTSRGSC3.4
RGSC_v3.412,428,995 - 2,429,166UniSTSRGSC3.4
Celera1785,348 - 785,519UniSTS
Celera1013,642,544 - 13,642,723UniSTS
Cytogenetic Map1p13UniSTS
Cytogenetic Map10q12UniSTS
RH125418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212,236,467 - 2,236,568 (+)MAPPERmRatBN7.2
Rnor_6.011,860,127 - 1,860,227NCBIRnor6.0
Rnor_5.013,556,884 - 3,556,984UniSTSRnor5.0
RGSC_v3.412,428,904 - 2,429,004UniSTSRGSC3.4
Celera1785,257 - 785,357UniSTS
Cytogenetic Map1p13UniSTS


Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62448 BioCyc
NCBI Gene 493584 ENTREZGENE
PhenoGen LOC493584 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 LOC493584  HN1-like pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL