Snrpg-ps1 (small nuclear ribonucleoprotein polypeptide G, pseudogene 1) - Rat Genome Database

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Gene: Snrpg-ps1 (small nuclear ribonucleoprotein polypeptide G, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Snrpg-ps1
Name: small nuclear ribonucleoprotein polypeptide G, pseudogene 1
RGD ID: 1588187
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC100360635; LOC680779; similar to small nuclear ribonucleoprotein polypeptide G; small nuclear ribonucleoprotein polypeptide G-like; small nuclear ribonucleoprotein polypeptide G-like 1; Snrpgl1
Related Functional Gene: Snrpg  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,292,586 - 82,292,980 (+)NCBIGRCr8
mRatBN7.21478,068,136 - 78,068,530 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1482,509,922 - 82,510,316 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,750,031 - 83,750,425 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,195,765 - 80,196,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,424,806 - 83,425,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01484,112,546 - 84,112,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,820,160 - 83,820,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1476,983,353 - 76,983,747 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Snrpg-ps1
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat

Markers in Region
RH125436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21478,068,283 - 78,068,433 (+)MAPPERmRatBN7.2
Rnor_6.01483,424,954 - 83,425,103NCBIRnor6.0
Rnor_5.01484,112,694 - 84,112,843UniSTSRnor5.0
RGSC_v3.41483,820,308 - 83,820,457UniSTSRGSC3.4
Celera1476,983,501 - 76,983,650UniSTS
Cytogenetic Map14q21UniSTS


Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15237 BioCyc
NCBI Gene 680779 ENTREZGENE
PhenoGen Snrpg-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Snrpg-ps1  small nuclear ribonucleoprotein polypeptide G, pseudogene 1  LOC100360635  small nuclear ribonucleoprotein polypeptide G-like  Data merged from RGD:2321722 737654 PROVISIONAL
2010-05-06 LOC100360635  small nuclear ribonucleoprotein polypeptide G-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-01-21 Snrpg-ps1  small nuclear ribonucleoprotein polypeptide G, pseudogene 1  Snrpgl1  small nuclear ribonucleoprotein polypeptide G-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-19 Snrpgl1  small nuclear ribonucleoprotein polypeptide G-like 1  LOC680779  similar to small nuclear ribonucleoprotein polypeptide G  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680779  similar to small nuclear ribonucleoprotein polypeptide G  LOC682775  similar to small nuclear ribonucleoprotein polypeptide G  Data merged from RGD:1595266 1643240 APPROVED
2006-11-20 LOC682775  similar to small nuclear ribonucleoprotein polypeptide G      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680779  similar to small nuclear ribonucleoprotein polypeptide G      Symbol and Name status set to provisional 70820 PROVISIONAL