Vom2r-ps96 (vomeronasal 2 receptor, pseudogene 96) - Rat Genome Database

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Gene: Vom2r-ps96 (vomeronasal 2 receptor, pseudogene 96) Rattus norvegicus
Analyze
Symbol: Vom2r-ps96
Name: vomeronasal 2 receptor, pseudogene 96
RGD ID: 1587650
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC108352480; LOC688529; similar to vomeronasal 2, receptor, 2; vomeronasal type-2 receptor 116-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,879,127 - 7,880,095 (-)NCBIGRCr8
mRatBN7.2123,081,301 - 3,082,269 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx123,740,367 - 3,741,335 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0124,363,987 - 4,364,955 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0123,034,025 - 3,034,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0124,779,781 - 4,780,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0126,901,966 - 6,902,934 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,054,471 - 1,055,439 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,900,210 - 4,901,178 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
Additional References at PubMed
PMID:17382427  


Genomics

Variants

.
Variants in Vom2r-ps96
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_006639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20333 BioCyc
NCBI Gene 688529 ENTREZGENE
PhenoGen Vom2r-ps96 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Vom2r-ps96  vomeronasal 2 receptor, pseudogene 96  LOC108352480  vomeronasal type-2 receptor 116-like  Data merged from RGD:11486599 737654 PROVISIONAL
2016-08-02 LOC108352480  vomeronasal type-2 receptor 116-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Vom2r-ps96  vomeronasal 2 receptor, pseudogene 96  LOC683437  similar to vomeronasal 2, receptor, 2  Data merged from RGD:1586853 1643240 APPROVED
2008-07-23 Vom2r-ps96  vomeronasal 2 receptor, pseudogene 96  LOC688529  similar to vomeronasal 2, receptor, 2  Symbol and Name updated 1299863 APPROVED
2006-11-19 LOC688529  similar to vomeronasal 2, receptor, 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683437  similar to vomeronasal 2, receptor, 2      Symbol and Name status set to provisional 70820 PROVISIONAL