Tuba1b-ps11 (tubulin, alpha 1B, pseudogene 11) - Rat Genome Database

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Gene: Tuba1b-ps11 (tubulin, alpha 1B, pseudogene 11) Rattus norvegicus
Analyze
Symbol: Tuba1b-ps11
Name: tubulin, alpha 1B, pseudogene 11
RGD ID: 1587577
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100911830; LOC689803; similar to tubulin, alpha 1; tubulin alpha-1C chain-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X154,735,990 - 154,737,612 (-)NCBIGRCr8
mRatBN7.2X149,691,375 - 149,692,831 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0169,265,805 - 69,267,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,903,323 - 69,941,579 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0170,669,108 - 70,670,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X157,580,029 - 157,581,383 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_145745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000093035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1669,903,323 - 69,941,579 (+)Ensembl
RefSeq Acc Id: XR_145745
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0170,669,108 - 70,670,596 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-715 BioCyc
Ensembl Genes ENSRNOG00000062143 Ensembl
NCBI Gene 689803 ENTREZGENE
PhenoGen Tuba1b-ps11 PhenoGen
RatGTEx ENSRNOG00000062143 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tuba1b-ps11  tubulin, alpha 1B, pseudogene 11  LOC689803  similar to tubulin, alpha 1  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC689803  similar to tubulin, alpha 1  LOC100911830  tubulin alpha-1C chain-like  Data merged from RGD:6490604 737654 PROVISIONAL
2012-07-05 LOC100911830  tubulin alpha-1C chain-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689803  similar to tubulin, alpha 1      Symbol and Name status set to provisional 70820 PROVISIONAL