Ldha-ps18 (lactate dehydrogenase A, pseudogene 18) - Rat Genome Database

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Gene: Ldha-ps18 (lactate dehydrogenase A, pseudogene 18) Rattus norvegicus
Analyze
Symbol: Ldha-ps18
Name: lactate dehydrogenase A, pseudogene 18
RGD ID: 1587404
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC687068; LOC691186; similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,292,279 - 12,293,990 (-)NCBIGRCr8
mRatBN7.2711,641,810 - 11,643,427 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0714,662,223 - 14,663,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0714,815,315 - 14,816,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4713,217,771 - 13,218,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera79,741,666 - 9,743,206 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Ldha-ps18
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_146067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_146067
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0714,815,390 - 14,816,501 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34819 BioCyc
NCBI Gene 691186 ENTREZGENE
PhenoGen Ldha-ps18 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ldha-ps18  lactate dehydrogenase A, pseudogene 18  LOC691186  similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC691186  similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)  LOC687068  similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)  Data merged from RGD:1590101 737654 PROVISIONAL
2006-11-20 LOC687068  similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691186  similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)      Symbol and Name status set to provisional 70820 PROVISIONAL