Rps15-ps2 (ribosomal protein S15, pseudogene 2) - Rat Genome Database

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Gene: Rps15-ps2 (ribosomal protein S15, pseudogene 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps15-ps2
Name: ribosomal protein S15, pseudogene 2
RGD ID: 1587266
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AC128207.2; LOC414358; ribosomal protein S15 pseudogene; ribosomal protein S15-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps15  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,550,928 - 1,551,414 (-)NCBIGRCr8
mRatBN7.27966,395 - 966,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7966,426 - 966,860 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl7966,426 - 966,860 (-)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,728,288 - 3,728,771 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,604,277 - 5,604,760 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,901,869 - 5,902,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,961,408 - 2,961,894 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,961,442 - 2,961,873 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.072,935,036 - 2,935,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,828,652 - 1,828,935 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7837,052 - 837,538 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822  


Genomics

Variants

.
Variants in Rps15-ps2
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067441   ⟹   ENSRNOP00000062631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7966,426 - 966,860 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAK6-F1-model_v2 AlphaFold D3ZAK6 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694958
Promoter ID:EPDNEW_R5466
Type:multiple initiation site
Name:AC128207_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.072,961,894 - 2,961,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587266 AgrOrtholog
BioCyc Gene G2FUF-35356 BioCyc
Ensembl Genes ENSRNOG00000043026 Ensembl, ENTREZGENE
NCBI Gene 414358 ENTREZGENE
PhenoGen Rps15-ps2 PhenoGen
RatGTEx ENSRNOG00000043026 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rps15-ps2  ribosomal protein S15, pseudogene 2  AC128207.2    Data merged from RGD:15004632 737654 PROVISIONAL
2019-11-08 AC128207.2        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-05-24 Rps15-ps2  ribosomal protein S15, pseudogene 2  LOC100360484  ribosomal protein S15-like  Data merged from RGD:2322072 1643240 APPROVED
2010-05-10 Rps15-ps2  ribosomal protein S15, pseudogene 2  LOC414358  ribosomal protein S15 pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360484  ribosomal protein S15-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC414358  ribosomal protein S15 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL