Slc6a17 (solute carrier family 6 member 17) - Rat Genome Database

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Gene: Slc6a17 (solute carrier family 6 member 17) Rattus norvegicus
Analyze
Symbol: Slc6a17
Name: solute carrier family 6 member 17
RGD ID: 1587185
Description: Predicted to enable symporter activity. Involved in neutral amino acid transport and protein catabolic process. Located in synaptic vesicle. Is active in GABA-ergic synapse; glutamatergic synapse; and synaptic vesicle membrane. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 48. Orthologous to human SLC6A17 (solute carrier family 6 member 17); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ntt4; orphan sodium- and chloride-dependent neurotransmitter transporter NTT4; sodium-dependent neurotransmitter transporter NTT4; sodium-dependent neutral amino acid transporter SLC6A17; solute carrier family 6 (neurotransmitter transporter), member 17; solute carrier family 6 (neutral amino acid transporter), member 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,795,622 - 197,843,883 (-)NCBIGRCr8
mRatBN7.22195,107,434 - 195,155,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,107,438 - 195,155,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,748,579 - 202,796,833 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,630,742 - 200,679,030 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,447,689 - 195,495,975 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,249,663 - 210,299,770 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,249,663 - 210,299,770 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,723,068 - 229,770,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2187,756,311 - 187,804,478 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Unexpected localization of the Na+/Cl--dependent-like orphan transporter, Rxt1, on synaptic vesicles in the rat central nervous system. Masson J, etal., Eur J Neurosci. 1999 Apr;11(4):1349-61.
3. The orphan transporter Rxt1/NTT4 (SLC6A17) functions as a synaptic vesicle amino acid transporter selective for proline, glycine, leucine, and alanine. Parra LA, etal., Mol Pharmacol. 2008 Dec;74(6):1521-32. doi: 10.1124/mol.108.050005. Epub 2008 Sep 3.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Synaptic Vesicle Protein NTT4/XT1 (SLC6A17) Catalyzes Na+-coupled Neutral Amino Acid Transport. Zaia KA and Reimer RJ, J Biol Chem. 2009 Mar 27;284(13):8439-48. doi: 10.1074/jbc.M806407200. Epub 2009 Jan 15.
Additional References at PubMed
PMID:8093354   PMID:8294906   PMID:19103603   PMID:22871113   PMID:23672601   PMID:25704603  


Genomics

Comparative Map Data
Slc6a17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,795,622 - 197,843,883 (-)NCBIGRCr8
mRatBN7.22195,107,434 - 195,155,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,107,438 - 195,155,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,748,579 - 202,796,833 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,630,742 - 200,679,030 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,447,689 - 195,495,975 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,249,663 - 210,299,770 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,249,663 - 210,299,770 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,723,068 - 229,770,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2187,756,311 - 187,804,478 (-)NCBICelera
Cytogenetic Map2q34NCBI
SLC6A17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,150,494 - 110,202,202 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,150,494 - 110,202,202 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,693,116 - 110,744,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,494,631 - 110,546,347 (+)NCBINCBI36Build 36hg18NCBI36
Celera1108,940,307 - 108,992,002 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1108,564,825 - 108,616,517 (+)NCBIHuRef
CHM1_11110,808,472 - 110,860,150 (+)NCBICHM1_1
T2T-CHM13v2.01110,165,448 - 110,217,172 (+)NCBIT2T-CHM13v2.0
Slc6a17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,374,864 - 107,425,334 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,374,859 - 107,425,334 (-)EnsemblGRCm39 Ensembl
GRCm383107,467,548 - 107,518,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,467,543 - 107,518,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,270,466 - 107,320,936 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,595,604 - 107,646,074 (-)NCBIMGSCv36mm8
Celera3109,799,771 - 109,850,336 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Slc6a17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,668,681 - 13,720,431 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,668,690 - 13,717,401 (+)NCBIChiLan1.0ChiLan1.0
SLC6A17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,836,537 - 116,887,917 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11115,984,157 - 116,039,267 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,801,302 - 112,852,916 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,489,270 - 127,540,695 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,488,569 - 127,540,695 (-)Ensemblpanpan1.1panPan2
SLC6A17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,773,367 - 41,822,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,773,369 - 41,822,962 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,549,987 - 44,599,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,104,940 - 42,154,386 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,104,946 - 42,145,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1641,838,008 - 41,887,439 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,796,025 - 41,845,526 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,231,137 - 42,280,580 (-)NCBIUU_Cfam_GSD_1.0
Slc6a17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,460,120 - 18,508,794 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367041,622,504 - 1,654,026 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367041,606,418 - 1,654,026 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4109,919,151 - 109,974,235 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14109,919,153 - 109,974,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24120,320,371 - 120,352,067 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,337,883 - 23,389,513 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2023,337,699 - 23,389,362 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603835,070,113 - 35,121,702 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,910,897 - 5,958,845 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,910,899 - 5,958,855 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc6a17
218 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:626
Count of miRNA genes:284
Interacting mature miRNAs:386
Transcripts:ENSRNOT00000075653
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2184114274202447032Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat

Markers in Region
D2Rat259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22195,108,573 - 195,108,792 (+)MAPPERmRatBN7.2
Rnor_6.02210,250,800 - 210,251,018NCBIRnor6.0
Rnor_5.02229,724,205 - 229,724,423UniSTSRnor5.0
Celera2187,757,448 - 187,757,666UniSTS
FHH x ACI Map288.8099RGD
FHH x ACI Map288.8099UniSTS
Cytogenetic Map2q34UniSTS
RH135159  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22195,108,542 - 195,108,739 (+)MAPPERmRatBN7.2
Rnor_6.02210,250,769 - 210,250,965NCBIRnor6.0
Rnor_5.02229,724,174 - 229,724,370UniSTSRnor5.0
Celera2187,757,417 - 187,757,613UniSTS
RH 3.4 Map21388.3UniSTS
Cytogenetic Map2q34UniSTS
RH144290  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22195,150,239 - 195,150,376 (+)MAPPERmRatBN7.2
Rnor_6.02210,294,176 - 210,294,312NCBIRnor6.0
Rnor_5.02229,765,139 - 229,765,275UniSTSRnor5.0
Celera2187,799,095 - 187,799,231UniSTS
RH 3.4 Map21388.3UniSTS
RH136805  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22195,109,249 - 195,109,390 (+)MAPPERmRatBN7.2
Rnor_6.02210,251,476 - 210,251,616NCBIRnor6.0
Rnor_5.02229,724,881 - 229,725,021UniSTSRnor5.0
Celera2187,758,124 - 187,758,264UniSTS
RH 3.4 Map21388.3UniSTS
Cytogenetic Map2q34UniSTS
RH137842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22195,110,538 - 195,110,694 (+)MAPPERmRatBN7.2
Rnor_6.02210,252,765 - 210,252,920NCBIRnor6.0
Rnor_5.02229,726,170 - 229,726,325UniSTSRnor5.0
Celera2187,759,413 - 187,759,568UniSTS
RH 3.4 Map21378.5UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 64 8 9
Low 3 18 23 7 16 7 7 10 10 27 32 11 7
Below cutoff 17 17 3 17 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075653   ⟹   ENSRNOP00000065179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2195,107,438 - 195,155,697 (-)Ensembl
Rnor_6.0 Ensembl2210,249,663 - 210,282,352 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2210,299,509 - 210,299,770 (-)Ensembl
RefSeq Acc Id: NM_001033079   ⟹   NP_001028251
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,795,622 - 197,843,883 (-)NCBI
mRatBN7.22195,107,434 - 195,155,697 (-)NCBI
Rnor_6.02210,249,663 - 210,299,770 (-)NCBI
Rnor_5.02229,723,068 - 229,770,561 (-)NCBI
Celera2187,756,311 - 187,804,478 (-)RGD
Sequence:
RefSeq Acc Id: XM_063282444   ⟹   XP_063138514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,795,622 - 197,843,842 (-)NCBI
RefSeq Acc Id: XM_063282445   ⟹   XP_063138515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,795,622 - 197,843,310 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001028251   ⟸   NM_001033079
- UniProtKB: P31662 (UniProtKB/Swiss-Prot),   A6HUU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000065179   ⟸   ENSRNOT00000075653
RefSeq Acc Id: XP_063138514   ⟸   XM_063282444
- Peptide Label: isoform X1
- UniProtKB: P31662 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063138515   ⟸   XM_063282445
- Peptide Label: isoform X1
- UniProtKB: P31662 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P31662-F1-model_v2 AlphaFold P31662 1-727 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691662
Promoter ID:EPDNEW_R2186
Type:initiation region
Name:Slc6a17_1
Description:solute carrier family 6 member 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02210,299,736 - 210,299,796EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587185 AgrOrtholog
BioCyc Gene G2FUF-51671 BioCyc
Ensembl Genes ENSRNOG00000050090 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055020383 UniProtKB/Swiss-Prot
  ENSRNOG00060024513 UniProtKB/Swiss-Prot
  ENSRNOG00065023082 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000075653 ENTREZGENE
  ENSRNOT00000075653.3 UniProtKB/Swiss-Prot
  ENSRNOT00055034824 UniProtKB/Swiss-Prot
  ENSRNOT00060042446 UniProtKB/Swiss-Prot
  ENSRNOT00065039458 UniProtKB/Swiss-Prot
InterPro Na/ntran_symport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neutral_aa_SLC6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:613226 UniProtKB/Swiss-Prot
NCBI Gene 613226 ENTREZGENE
PANTHER PTHR11616 UniProtKB/Swiss-Prot
  SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER SLC6A17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/CHLORIDE DEPENDENT TRANSPORTER UniProtKB/TrEMBL
Pfam SNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc6a17 PhenoGen
PRINTS NANEUSMPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ORPHTRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050090 RatGTEx
  ENSRNOG00055020383 RatGTEx
  ENSRNOG00060024513 RatGTEx
  ENSRNOG00065023082 RatGTEx
Superfamily-SCOP SNF-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6HUU3 ENTREZGENE, UniProtKB/TrEMBL
  A6HUU4_RAT UniProtKB/TrEMBL
  A6HUU5_RAT UniProtKB/TrEMBL
  P31662 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc6a17  solute carrier family 6 member 17  Slc6a17  solute carrier family 6 (neutral amino acid transporter), member 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc6a17  solute carrier family 6 (neutral amino acid transporter), member 17  Slc6a17  solute carrier family 6 (neurotransmitter transporter), member 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 Slc6a17  solute carrier family 6 (neurotransmitter transporter), member 17      Symbol and Name status set to provisional 70820 PROVISIONAL