Ubcl1 (ubiquitin C like 1) - Rat Genome Database

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Gene: Ubcl1 (ubiquitin C like 1) Rattus norvegicus
Analyze
Symbol: Ubcl1 (Ensembl: LOC679594)
Name: ubiquitin C like 1 (Ensembl:similar to polyubiquitin)
RGD ID: 1587089
Description: Predicted to be located in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC679594; similar to polyubiquitin; ubiquitin-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81312,322,004 - 12,322,472 (-)NCBIGRCr8
mRatBN7.21311,802,998 - 11,803,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1311,803,152 - 11,803,385 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01314,315,684 - 14,316,008 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01319,554,743 - 19,555,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4131,120,887 - 1,121,195 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1311,832,940 - 11,833,288 (-)NCBICelera
Cytogenetic Map13p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:31904090  


Genomics

Variants

.
Variants in Ubcl1
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131176653523001904Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000108796   ⟹   ENSRNOP00000086791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1311,803,152 - 11,803,385 (-)Ensembl
RefSeq Acc Id: XM_006249614   ⟹   XP_006249676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81312,322,004 - 12,322,472 (-)NCBI
mRatBN7.21311,802,998 - 11,803,461 (-)NCBI
Rnor_6.01314,315,684 - 14,316,008 (-)NCBI
Rnor_5.01319,554,743 - 19,555,067 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006249676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086760.1
  ENSRNOP00000086791
  ENSRNOP00000086791.1
Reference Protein Sequences
RefSeq Acc Id: XP_006249676   ⟸   XM_006249614
- UniProtKB: A0A8I6A1Y5 (UniProtKB/TrEMBL),   A0A8I6A5Y3 (UniProtKB/TrEMBL),   A6HFD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000086791   ⟸   ENSRNOT00000108796
Protein Domains
Ubiquitin-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-18677 BioCyc
Ensembl Genes ENSRNOG00000065739 UniProtKB/TrEMBL
  ENSRNOG00000069659 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000108796.1 UniProtKB/TrEMBL
  ENSRNOT00000116955.1 UniProtKB/TrEMBL
InterPro Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report rno:100360645 UniProtKB/TrEMBL
  rno:679594 UniProtKB/TrEMBL
NCBI Gene 679594 ENTREZGENE
PANTHER SIMILAR TO POLYUBIQUITIN UniProtKB/TrEMBL
  UBIQUITIN UniProtKB/TrEMBL
  UBIQUITIN-60S RIBOSOMAL PROTEIN L40 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PhenoGen Ubcl1 PhenoGen
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000065739 RatGTEx
  ENSRNOG00000069659 RatGTEx
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8I6A1Y5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5Y3 ENTREZGENE, UniProtKB/TrEMBL
  A6HFD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ubcl1  ubiquitin C like 1  LOC679594  similar to polyubiquitin  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC679594  similar to polyubiquitin      Symbol and Name status set to provisional 70820 PROVISIONAL