Rpl38l5 (ribosomal protein L38 like 5) - Rat Genome Database

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Gene: Rpl38l5 (ribosomal protein L38 like 5) Rattus norvegicus
Analyze
Symbol: Rpl38l5
Name: ribosomal protein L38 like 5
RGD ID: 1586630
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L38-like; large ribosomal subunit protein eL38-like; LOC686066; ribosomal protein L38-like; similar to 60S ribosomal protein L38
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,060,652 - 34,061,195 (-)NCBIGRCr8
mRatBN7.2313,662,966 - 13,663,913 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.038,955,289 - 8,955,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0314,308,063 - 14,308,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,434,925 - 9,435,131 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera38,429,529 - 8,429,895 (-)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl38l5
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat


Expression


Sequence


RefSeq Acc Id: XM_039106781   ⟹   XP_038962709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8334,060,652 - 34,061,195 (-)NCBI
mRatBN7.2313,662,966 - 13,663,913 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038962709 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038962709   ⟸   XM_039106781


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50216 BioCyc
NCBI Gene 686066 ENTREZGENE
PhenoGen Rpl38l5 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl38l5  ribosomal protein L38 like 5  Rpl38l1  ribosomal protein L38 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl38l1  ribosomal protein L38 like 1  LOC686066  similar to 60S ribosomal protein L38  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC686066  similar to 60S ribosomal protein L38  LOC687648  similar to 60S ribosomal protein L38  Data merged from RGD:1583059 1643240 APPROVED
2006-11-19 LOC686066  similar to 60S ribosomal protein L38      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687648  similar to 60S ribosomal protein L38      Symbol and Name status set to provisional 70820 PROVISIONAL