LOC689908 (similar to heat shock protein 8)

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Keyword

Gene: LOC689908 (similar to heat shock protein 8) Rattus norvegicus

Symbol:

LOC689908

Name:

similar to heat shock protein 8

Description:

Type:

protein-coding

Also known as:

similar to heat shock protein 8

Latest Assembly:

RGSC Genome Assembly v3.4

NCBI Annotation Information:

Genome Annotation Status: not on current assembly

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	2	q32		NCBI
RGSC Genome Assembly v3.4	2	170,308,779 - 170,310,886	+	NCBI

Model

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Annotation (Toggle Detail/Summary View)

References - curated

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578671	Bmd10	Bone mineral density QTL 10	5.4		Bone mineral density	femoral neck cortical vBMD	2	9670332	227150249	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		Cardiac mass		2	24474447	212169089	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		Cardiac mass		2	24474447	212169089	Rat
61467	Bp14	Blood pressure QTL 14	2.2		Blood pressure		2	42866342	210636008	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		Hormone level	leptin	2	42882523	191378271	Rat
631266	Bp132	Blood pressure QTL 132		.0005	Blood pressure	systolic	2	46542246	210636169	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		Blood pressure	time series calculation	2	56214854	210636169	Rat
1298080	Bp163	Blood pressure QTL 163		.02	Blood pressure	systolic	2	66680022	210636169	Rat
1354648	Bp239	Blood pressure QTL 239		.001	Blood pressure	systolic	2	66680209	235799396	Rat
1354605	Rf48	Renal function QTL 48	2.9		Creatinine level	serum	2	75806326	214989298	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	.86	Gland mass	pituitary	2	77630629	210636169	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		Renal function	urine albumin level	2	79796833	227150249	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		.0001	Renal function	urine albumin level	2	79796977	227150051	Rat
1581576	Pur7	Proteinuria QTL 7		.0001	Renal function	urine protein level	2	79796977	227150051	Rat
1354622	Kidm16	Kidney mass QTL 16	3		Kidney mass	left kidney mass	2	82826122	231465091	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		Kidney mass	left kidney mass adjujsted for tibia length	2	82826122	236153712	Rat
631507	Bp105	Blood pressure QTL 105		.001	Blood pressure		2	116874922	221284686	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		Consumption level	saccharin preference	2	116874922	221284686	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		Bone structure	femoral neck cortical area	2	118264490	220244597	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	.0001	Bone mineral density	spine area by pQCT	2	118264840	221131552	Rat
6907363	Bp357	Blood pressure QTL 357	2.4	.002	Blood pressure	diastolic	2	136212270	181212270	Rat
1300165	Rf9	Renal function QTL 9	3.28		Renal function	hypertension related glomerular damage	2	138700979	210636169	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	2.76		Blood pressure		2	140403692	210636008	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			Gland mass	thymus	2	141755026	197256313	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		Prepulse inhibition		2	141755026	222281918	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		Renal pathology	kidney dilation	2	144377723	189377723	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		Cardiac mass		2	146228221	232307864	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		Blood pressure	systolic	2	146228221	232307864	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	.009	Carrageenan-induced inflammation		2	146659370	210636169	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	.01	Cardiac mass	left ventricle	2	148790600	227150249	Rat
6903312	Bw112	Body weight QTL 112	3.2	.0013	Body weight		2	148790758	191378142	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		Glucose level	postprandial	2	152256313	197256313	Rat
631520	Bp73	Blood pressure QTL 73		.0001	Blood pressure	systolic	2	153031724	174727552	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		Blood pressure	systolic	2	154238265	199238265	Rat
1641925	Alcrsp2	Alcohol response QTL 2			Alcohol response	loss of righting reflex	2	155101972	230157845	Rat
1641891	Alcrsp17	Alcohol response QTL 17			Alcohol response	loss of righting reflex	2	155101972	247295816	Rat
1598805	Memor8	Memory QTL 8	3		Memory	navigation-spatial	2	155920709	197555821	Rat
631501	Bp101	Blood pressure QTL 101	2.4		Blood pressure	systolic	2	155920808	210636008	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	.000006	Insulin level	post-pancreatectomy	2	156142685	210636169	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		Blood pressure	systolic	2	156142685	210636169	Rat
2301415	Cm67	Cardiac mass QTL 67		.003	Cardiac mass	aorta	2	158146823	182740242	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		Renal function	urine albumin level	2	161170272	218568266	Rat
1359032	Hrtrt18	Heart rate QTL 18			Heart rate	salt-induced bradycardia	2	163154227	200390471	Rat
1302793	Bw16	Body weight QTL 16	5	.0001	Body weight		2	163154358	210636008	Rat
1358900	Bw48	Body weight QTL 48	4.88		Body weight		2	163154358	227150051	Rat
1298074	Bp164	Blood pressure QTL 164		.003	Blood pressure	salt-loaded systolic	2	165636169	210636169	Rat
1298076	Bp166	Blood pressure QTL 166		.0009	Blood pressure	systolic	2	165636169	210636169	Rat
1298085	Bp165	Blood pressure QTL 165		.0006	Blood pressure	salt-loaded systolic	2	165636169	210636169	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		Hypothalamic-pituitary-adrenal axis	corticosterone post-stress	2	167857161	231465091	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on LOC689908
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1586392
Created:	2006-11-19
Species:	Rattus norvegicus
Last Modified:	2013-04-16
Status:	ACTIVE