LOC689962 (hypothetical protein LOC689962)

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Keyword

Gene: LOC689962 (hypothetical protein LOC689962) Rattus norvegicus

Symbol:

LOC689962

Name:

hypothetical protein LOC689962

Description:

INVOLVED IN female gonad development (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

coiled-coil domain-containing protein ENSP00000299415 homolog; hypothetical protein LOC689962

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	10	q26		NCBI
RGSC Genome Assembly v5.0	10	74,487,832 - 74,488,266	-	NCBI
RGSC Genome Assembly v3.4	10	76,608,459 - 76,608,917	+	NCBI
Rat Celera Assembly	10	71,999,562 - 72,000,187	+	NCBI

Model

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Annotation (Toggle Detail/Summary View)

Gene Ontology Annotations

Genomics

Position Markers

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631530	Tls3	T-lymphoma susceptibility QTL 3	6.7	.0001	T-lymphoma susceptibility	propylnitrosourea induced	10	53781298	100090301	Rat
631535	Cm51	Cardiac mass QTL 51	3		Cardiac mass		10	53792967	96584953	Rat
631542	Bp82	Blood pressure QTL 82	6.8		Blood pressure	systolic	10	27184741	103551039	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		Anti-type II collagen autoantibody titer	collagen induced	10	64308668	95695218	Rat
1357344	Bp249	Blood pressure QTL 249		.0001	Blood pressure		10	69986912	102587587	Rat
70223	Bp57	Blood pressure QTL 57	5		Blood pressure	indirect systolic	10	21607719	84443989	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	.0005	Carrageenan-induced inflammation	exudate volume	10	55851811	101848470	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		Blood pressure		10	21607719	91471072	Rat
70363	Bp71	Blood pressure QTL 71		.04	Blood pressure		10	67677924	85489479	Rat
70364	Bp72	Blood pressure QTL 72			Blood pressure		10	55633982	100633982	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		Joint/bone inflammation	type II collagen induced	10	6380753	100633982	Rat
724527	Bp148	Blood pressure QTL 148		.0001	Blood pressure		10	42272656	87272656	Rat
631557	Bp136	Blood pressure QTL 136		.003	Blood pressure		10	34229233	79229233	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.82		Blood pressure		1	21607719	91471072	Rat
61387	Bp1	Blood pressure QTL 1	5.1		Blood pressure		10	53800677	101848470	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	.0002	Vascular lesion number	aorta	10	36254741	95369088	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		Copper level	hepatic	10	70191595	77091834	Rat
631567	Bp91	Blood pressure QTL 91		.0001	Blood pressure	systolic	10	56848683	101848683	Rat
724556	Pur2	Proteinuria QTL 2	5.5		Renal function		10	22915259	95066632	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		Blood pressure	salt-loaded systolic	10	27184741	102587587	Rat
1298078	Stresp5	Stress response QTL 5	2.99	.00025	Hormone level	corticosterone	10	43458380	108776963	Rat
61354	Pia10	Pristane induced arthritis QTL 10		.01	Joint/bone inflammation	pristane induced	10	24006429	160657542	Rat
61396	Bp9	Blood pressure QTL 9	4.8	.0001	Blood pressure	salt-loaded systolic	10	72871396	117871396	Rat
61463	Bp12	Blood pressure QTL 12	6.3	.0001	Blood pressure	salt-loaded systolic	10	42554668	87554668	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		Glucose level	postprandial	10	67678060	86316831	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		Cardiac mass		10	29974190	95369088	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		Cardiac mass	left ventricle	10	56930545	97589703	Rat
1358915	Stresp7	Stress response QTL 7	3.52		Hormone level	norepinephrine	10	68955627	113955627	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	.0001	Bone mineral density	spine volumetric BMD by pQCT	10	20233281	104013574	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		Heart rate	stress-induced tachycardia	10	68526078	101292630	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		Lipid level	baseline serum cholesterol	10	54091148	99091148	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		.0041	Neural tumor susceptibility	tumor incidence, length of survival time	10	63816942	108816942	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			Joint/bone inflammation	type II collagen-induced	10	35131252	95695218	Rat
6893336	Cm75	Cardiac mass QTL 75	.1	.87	Cardiac mass	body weight adjusted	10	67677924	100865886	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	.0000368	Cardiac mass	body weight adjusted	10	67677924	100865886	Rat
6893342	Cm78	Cardiac mass QTL 78	.1	.88	Cardiac mass	body weight adjusted	10	36254741	83528010	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		Tongue tumor susceptibility	tongue tumor number	10	33351756	78351756	Rat
2289985	Bp305	Blood pressure QTL 305			Blood pressure		10	70757255	77219852	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	.0001	Bone mineral density		10	51099067	85484602	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	.0001	Bone structure		10	74167134	119167134	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	.0001	Bone structure		10	74167134	119167134	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	.0001	Bone mineral density		10	51099067	85484602	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		.003	Mammary tumor resistance		10	9762188	108776963	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	2.2		Neuroinflammation		10	65668446	132729388	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	.0001	Bone mineral density		10	74167134	119167134	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	.0001	Bone structure		10	62984501	107984501	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	.0001	Bone mineral density		10	51099067	85484602	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	.0001	Bone mineral density		10	51099067	85484602	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			Lipid level	cholesterol	10	46483646	100090301	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		Cardiac mass	left ventricle	10	14721135	92841289	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		Peripheral nerve inflammation	demyelination	10	76043832	98392296	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		Joint/bone inflammation	adjuvant induced	10	70229781	115229781	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		Joint/bone inflammation	adjuvant induced	10	70229781	115229781	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		Joint/bone inflammation	adjuvant induced	10	41317054	86317054	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		Joint/bone inflammation	adjuvant induced	10	41317054	86317054	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		Glucose level	postprandial	10	14721135	154166503	Rat
6893366	Bw106	Body weight QTL 106	.3	.47	Body weight		10	74652410	119652410	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		Anxiety response		10	67677924	102796362	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		Bone strength	Lumbar vertebra L5 ultimate force	10	61314296	106314296	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		Bone mineral density	Femur neck cross-sectional total area	10	51099067	85484602	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		.004	Uvea inflammation score		10	35713452	101848683	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		.01	Joint/bone inflammation	arthritis severity	10	24006429	160657542	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		.0169	Uvea inflammation		10	69160380	86317054	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		Joint/bone inflammation	arthritis severity	10	41339689	152260081	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		Joint/bone inflammation	arthritis severity	10	41339689	152260081	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		Joint/bone inflammation	arthritis severity	10	24006429	160657542	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		Joint/bone inflammation	arthritis severity	10	14721135	159833317	Rat
70164	Bw21	Body weight QTL 21	4.36	.00005	Body weight		10	55851811	103550924	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on LOC689962
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1586338
Created:	2006-11-19
Species:	Rattus norvegicus
Last Modified:	2013-05-28
Status:	ACTIVE