Eif4e1b (eukaryotic translation initiation factor 4E family member 1B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Eif4e1b (eukaryotic translation initiation factor 4E family member 1B) Rattus norvegicus
Analyze
Symbol: Eif4e1b (Ensembl: AC135142.1)
Name: eukaryotic translation initiation factor 4E family member 1B
RGD ID: 1585494
Description: Predicted to enable RNA binding activity and translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to be located in cytoplasm. Orthologous to human EIF4E1B (eukaryotic translation initiation factor 4E family member 1B); INTERACTS WITH bisphenol A; (+)-catechin (ortholog); 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eukaryotic translation initiation factor 4E type 1B; LOC686104; similar to eukaryotic translation initiation factor 4e 1a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,835,883 - 9,868,781 (-)NCBIGRCr8
mRatBN7.2179,831,338 - 9,856,250 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,832,230 - 9,835,137 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01710,369,153 - 10,391,667 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01712,495,105 - 12,518,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,892,927 - 15,904,867 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,906,566 - 9,929,057 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Eif4e1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,835,883 - 9,868,781 (-)NCBIGRCr8
mRatBN7.2179,831,338 - 9,856,250 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,832,230 - 9,835,137 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01710,369,153 - 10,391,667 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01712,495,105 - 12,518,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,892,927 - 15,904,867 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,906,566 - 9,929,057 (-)NCBICelera
Cytogenetic Map17p14NCBI
EIF4E1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,630,675 - 176,646,644 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5176,630,618 - 176,646,644 (+)EnsemblGRCh38hg38GRCh38
GRCh375176,057,676 - 176,073,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,990,289 - 176,006,248 (+)NCBINCBI36Build 36hg18NCBI36
Celera5172,426,610 - 172,442,576 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,981,382 - 170,997,656 (+)NCBIHuRef
CHM1_15175,490,107 - 175,506,076 (+)NCBICHM1_1
T2T-CHM13v2.05177,177,255 - 177,193,232 (+)NCBIT2T-CHM13v2.0
Eif4e1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,931,807 - 54,936,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,931,811 - 54,936,272 (+)EnsemblGRCm39 Ensembl
GRCm381354,783,994 - 54,788,459 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,783,998 - 54,788,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,885,364 - 54,889,820 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,263,159 - 54,266,201 (+)NCBIMGSCv36mm8
MGSCv361354,793,635 - 54,798,073 (+)NCBIMGSCv36mm8
Cytogenetic Map13B1NCBI
cM Map1329.39NCBI
Eif4e1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,910,141 - 28,913,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,910,141 - 28,913,692 (+)NCBIChiLan1.0ChiLan1.0
EIF4E1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,723,454 - 171,727,136 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15169,862,997 - 169,866,675 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05171,941,013 - 171,944,691 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15178,998,930 - 179,014,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,010,207 - 179,014,809 (+)Ensemblpanpan1.1panPan2
EIF4E1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,695,229 - 36,701,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,695,107 - 36,699,254 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,662,968 - 36,668,831 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,062,269 - 37,068,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,062,269 - 37,065,368 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,888,158 - 36,893,997 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,075,821 - 37,081,660 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,584,094 - 37,587,313 (-)NCBIUU_Cfam_GSD_1.0
Eif4e1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,863,445 - 121,875,777 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936597896,952 - 899,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936597898,012 - 900,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4E1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,277,952 - 81,281,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1281,277,086 - 81,281,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2282,879,022 - 82,883,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4E1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,650,378 - 78,653,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,650,330 - 78,653,524 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660759,807,894 - 9,811,122 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif4e1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473313,476,389 - 13,489,273 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eif4e1b
98 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:117
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000037527, ENSRNOT00000075579
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039096186   ⟹   XP_038952114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,835,883 - 9,868,781 (-)NCBI
mRatBN7.2179,831,338 - 9,856,250 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038952114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086233.1
Reference Protein Sequences
RefSeq Acc Id: XP_038952114   ⟸   XM_039096186
- UniProtKB: A0A8I6A3E5 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585494 AgrOrtholog
BioCyc Gene G2FUF-10182 BioCyc
Ensembl Genes ENSRNOG00000025480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092279.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.760.10 UniProtKB/TrEMBL
InterPro TIF_eIF4e-like UniProtKB/TrEMBL
  TIF_eIF_4E UniProtKB/TrEMBL
  TIF_eIF_4E_CS UniProtKB/TrEMBL
NCBI Gene 686104 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 1B UniProtKB/TrEMBL
  PTHR11960 UniProtKB/TrEMBL
Pfam IF4E UniProtKB/TrEMBL
PhenoGen Eif4e1b PhenoGen
PROSITE IF4E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025480 RatGTEx
Superfamily-SCOP SSF55418 UniProtKB/TrEMBL
UniProt A0A8I6A3E5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Eif4e1b  eukaryotic translation initiation factor 4E family member 1B  LOC684368  similar to eukaryotic translation initiation factor 4e 1a  Data merged from RGD:1591444 1643240 APPROVED
2008-03-05 Eif4e1b  eukaryotic translation initiation factor 4E family member 1B  LOC686104  similar to eukaryotic translation initiation factor 4e 1a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC684368  similar to eukaryotic translation initiation factor 4e 1a      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686104  similar to eukaryotic translation initiation factor 4e 1a      Symbol and Name status set to provisional 70820 PROVISIONAL