C12h12orf43-ps1 (similar to human chromosome 12 open reading frame 43, pseudogene 1) - Rat Genome Database

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Gene: C12h12orf43-ps1 (similar to human chromosome 12 open reading frame 43, pseudogene 1) Rattus norvegicus
Analyze
Symbol: C12h12orf43-ps1
Name: similar to human chromosome 12 open reading frame 43, pseudogene 1
RGD ID: 1585219
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC688789; LOC688789
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,196,067 - 7,197,431 (+)NCBIGRCr8
mRatBN7.2122,398,208 - 2,399,111 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0122,747,418 - 2,748,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0124,899,804 - 4,900,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,755,826 - 1,756,775 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,218,284 - 4,219,226 (+)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in C12h12orf43-ps1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat

Markers in Region
RH135370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21241,672,866 - 41,673,450 (+)MAPPERmRatBN7.2
mRatBN7.2122,398,621 - 2,398,816 (-)MAPPERmRatBN7.2
Rnor_6.0122,747,739 - 2,747,933NCBIRnor6.0
Rnor_6.01247,434,105 - 47,434,688NCBIRnor6.0
Rnor_5.01249,227,509 - 49,228,092UniSTSRnor5.0
Rnor_5.0124,900,143 - 4,900,337UniSTSRnor5.0
RGSC_v3.4121,756,167 - 1,756,361UniSTSRGSC3.4
RGSC_v3.41242,946,433 - 42,947,016UniSTSRGSC3.4
Celera1243,289,959 - 43,290,542UniSTS
Celera124,218,698 - 4,218,892UniSTS
RH 3.4 Map12775.42UniSTS
Cytogenetic Map12q16UniSTS
Cytogenetic Map12p12UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_085583
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera124,218,284 - 4,219,233 (+)RGD
RefSeq Acc Id: XR_085982
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4121,755,826 - 1,756,775 (-)RGD

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20362 BioCyc
NCBI Gene 688789 ENTREZGENE
PhenoGen C12h12orf43-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 C12h12orf43-ps1  similar to human chromosome 12 open reading frame 43, pseudogene 1  LOC688789  hypothetical protein LOC688789  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC688789  hypothetical protein LOC688789      Symbol and Name status set to provisional 70820 PROVISIONAL