Nbas (NBAS subunit of NRZ tethering complex) - Rat Genome Database

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Gene: Nbas (NBAS subunit of NRZ tethering complex) Rattus norvegicus
Analyze
Symbol: Nbas
Name: NBAS subunit of NRZ tethering complex
RGD ID: 1585140
Description: Predicted to enable SNARE binding activity. Predicted to be involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; nuclear-transcribed mRNA catabolic process; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Predicted to be part of Dsl1/NZR complex. Human ortholog(s) of this gene implicated in infantile liver failure syndrome. Orthologous to human NBAS (NBAS subunit of NRZ tethering complex); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313967; LOC690073; neuroblastoma amplified sequence; neuroblastoma-amplified protein-like; neuroblastoma-amplified sequence; similar to 4933425L03Rik protein; similar to neuroblastoma-amplified protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8641,777,253 - 42,081,895 (+)NCBIGRCr8
mRatBN7.2636,048,357 - 36,353,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl636,048,191 - 36,352,984 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0638,474,773 - 38,777,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl638,474,804 - 38,777,806 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0647,240,400 - 47,541,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0646,936,050 - 46,954,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4636,846,485 - 37,159,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera635,410,606 - 35,711,396 (+)NCBICelera
Cytogenetic Map6q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (ISO)
SNARE binding  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Recurrent acute liver failure due to NBAS deficiency: phenotypic spectrum, disease mechanisms, and therapeutic concepts. Staufner C, etal., J Inherit Metab Dis. 2016 Jan;39(1):3-16. doi: 10.1007/s10545-015-9896-7. Epub 2015 Nov 5.
Additional References at PubMed
PMID:19369418   PMID:19946888   PMID:20462495   PMID:23828042   PMID:25002582  


Genomics

Comparative Map Data
Nbas
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8641,777,253 - 42,081,895 (+)NCBIGRCr8
mRatBN7.2636,048,357 - 36,353,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl636,048,191 - 36,352,984 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0638,474,773 - 38,777,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl638,474,804 - 38,777,806 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0647,240,400 - 47,541,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0646,936,050 - 46,954,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4636,846,485 - 37,159,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera635,410,606 - 35,711,396 (+)NCBICelera
Cytogenetic Map6q15NCBI
NBAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38214,778,909 - 15,561,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl215,166,916 - 15,561,340 (-)EnsemblGRCh38hg38GRCh38
GRCh37215,307,040 - 15,701,458 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36215,224,483 - 15,618,905 (-)NCBINCBI36Build 36hg18NCBI36
Celera215,224,679 - 15,619,170 (-)NCBICelera
Cytogenetic Map2p24.3NCBI
HuRef215,157,911 - 15,552,718 (-)NCBIHuRef
CHM1_1215,236,546 - 15,631,326 (-)NCBICHM1_1
T2T-CHM13v2.0214,809,697 - 15,592,931 (-)NCBIT2T-CHM13v2.0
Nbas
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391213,319,102 - 13,687,381 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1213,319,134 - 13,633,812 (+)EnsemblGRCm39 Ensembl
GRCm381213,269,101 - 13,637,380 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1213,269,133 - 13,583,811 (+)EnsemblGRCm38mm10GRCm38
MGSCv371213,275,933 - 13,590,617 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361213,331,037 - 13,645,575 (+)NCBIMGSCv36mm8
Celera1213,613,765 - 13,933,105 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map126.45NCBI
Nbas
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554878,894,187 - 9,073,663 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554878,894,403 - 9,073,535 (-)NCBIChiLan1.0ChiLan1.0
NBAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212110,957,574 - 111,350,980 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A110,959,542 - 111,354,955 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A15,159,193 - 15,552,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A15,293,512 - 15,685,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A15,293,512 - 15,685,820 (-)Ensemblpanpan1.1panPan2
NBAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11711,091,536 - 11,410,284 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1711,091,543 - 11,430,839 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1711,034,754 - 11,353,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01711,218,973 - 11,538,024 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1711,218,976 - 11,558,541 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11711,079,978 - 11,397,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01711,089,518 - 11,408,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01711,112,793 - 11,432,313 (-)NCBIUU_Cfam_GSD_1.0
Nbas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629255,598,394 - 55,896,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649314,943,926 - 15,241,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649314,940,592 - 15,241,209 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NBAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3121,882,744 - 122,242,326 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13121,882,734 - 122,242,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23130,558,729 - 130,705,844 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NBAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11492,045,416 - 92,475,079 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1492,078,045 - 92,474,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604519,776,352 - 20,189,451 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nbas
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624865961,587 - 1,212,950 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624865937,495 - 1,208,663 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nbas
1268 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:54
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000009779
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat

Markers in Region
RH130456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21621,339,079 - 21,339,265 (+)MAPPERmRatBN7.2
mRatBN7.2636,330,479 - 36,330,665 (-)MAPPERmRatBN7.2
mRatBN7.21621,339,079 - 21,339,265 (-)MAPPERmRatBN7.2
mRatBN7.2636,330,479 - 36,330,665 (+)MAPPERmRatBN7.2
Rnor_6.0638,754,976 - 38,755,161NCBIRnor6.0
Rnor_6.01623,083,321 - 23,083,506NCBIRnor6.0
Rnor_5.01622,971,781 - 22,971,966UniSTSRnor5.0
Rnor_5.0647,519,320 - 47,519,505UniSTSRnor5.0
Celera1621,498,166 - 21,498,351UniSTS
Celera635,691,161 - 35,691,346UniSTS
RH 3.4 Map16256.66UniSTS
Cytogenetic Map6q15UniSTS
RH141894  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2636,221,637 - 36,221,835 (+)MAPPERmRatBN7.2
Rnor_6.0638,646,674 - 38,646,871NCBIRnor6.0
Rnor_5.0647,412,047 - 47,412,244UniSTSRnor5.0
RGSC_v3.4637,021,634 - 37,021,831UniSTSRGSC3.4
Celera635,583,493 - 35,583,690UniSTS
RH 3.4 Map6145.9UniSTS
Cytogenetic Map6q15UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 25 9 16 9 2 2 70 28 38 10 2
Low 2 39 32 32 3 32 6 9 4 7 3 1 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009779   ⟹   ENSRNOP00000009779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl636,048,191 - 36,352,984 (+)Ensembl
Rnor_6.0 Ensembl638,474,804 - 38,777,806 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109871   ⟹   ENSRNOP00000095043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl636,048,191 - 36,352,984 (+)Ensembl
RefSeq Acc Id: NM_001427446   ⟹   NP_001414375
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,290 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_006239902   ⟹   XP_006239964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
mRatBN7.2636,048,361 - 36,353,206 (+)NCBI
Rnor_6.0638,474,773 - 38,777,146 (+)NCBI
Rnor_5.0647,240,400 - 47,541,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239903   ⟹   XP_006239965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
mRatBN7.2636,048,361 - 36,353,206 (+)NCBI
Rnor_6.0638,474,773 - 38,777,146 (+)NCBI
Rnor_5.0647,240,400 - 47,541,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239904   ⟹   XP_006239966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,255 - 42,081,895 (+)NCBI
mRatBN7.2636,048,362 - 36,353,206 (+)NCBI
Rnor_6.0638,474,773 - 38,777,146 (+)NCBI
Rnor_5.0647,240,400 - 47,541,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113134   ⟹   XP_038969062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
mRatBN7.2636,048,361 - 36,353,206 (+)NCBI
RefSeq Acc Id: XM_063262512   ⟹   XP_063118582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_063262513   ⟹   XP_063118583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_063262514   ⟹   XP_063118584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_063262515   ⟹   XP_063118585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,254 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_063262517   ⟹   XP_063118587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,253 - 42,081,895 (+)NCBI
RefSeq Acc Id: XM_063262518   ⟹   XP_063118588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,777,255 - 42,081,895 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006239964   ⟸   XM_006239902
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AM92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239966   ⟸   XM_006239904
- Peptide Label: isoform X8
- UniProtKB: F1M0U5 (UniProtKB/TrEMBL),   A0A8I6AM92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239965   ⟸   XM_006239903
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AM92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009779   ⟸   ENSRNOT00000009779
RefSeq Acc Id: XP_038969062   ⟸   XM_039113134
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AM92 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000095043   ⟸   ENSRNOT00000109871
RefSeq Acc Id: XP_063118587   ⟸   XM_063262517
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063118582   ⟸   XM_063262512
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118584   ⟸   XM_063262514
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118585   ⟸   XM_063262515
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063118583   ⟸   XM_063262513
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118588   ⟸   XM_063262518
- Peptide Label: isoform X10
RefSeq Acc Id: NP_001414375   ⟸   NM_001427446
Protein Domains
Neuroblastoma-amplified sequence N-terminal   Sec39

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0U5-F1-model_v2 AlphaFold F1M0U5 1-2357 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694502
Promoter ID:EPDNEW_R5025
Type:initiation region
Name:Nbas_1
Description:neuroblastoma amplified sequence
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0638,474,817 - 38,474,877EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585140 AgrOrtholog
BioCyc Gene G2FUF-38123 BioCyc
Ensembl Genes ENSRNOG00000024503 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009779.8 UniProtKB/TrEMBL
  ENSRNOT00000109871.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro NBAS_N UniProtKB/TrEMBL
  Quino_amine_DH_bsu UniProtKB/TrEMBL
  Sec39 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 690073 ENTREZGENE
PANTHER NEUROBLASTOMA-AMPLIFIED SEQUENCE UniProtKB/TrEMBL
  NEUROBLASTOMA-AMPLIFIED SEQUENCE UniProtKB/TrEMBL
Pfam Nbas_N UniProtKB/TrEMBL
  Sec39 UniProtKB/TrEMBL
PhenoGen Nbas PhenoGen
RatGTEx ENSRNOG00000024503 RatGTEx
Superfamily-SCOP Amine_DH_B_like UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A8I6AM92 ENTREZGENE, UniProtKB/TrEMBL
  F1M0U5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-09 Nbas  NBAS subunit of NRZ tethering complex  Nbas  neuroblastoma amplified sequence  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-10-18 Nbas  neuroblastoma amplified sequence  LOC690073  similar to neuroblastoma-amplified protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690073  similar to neuroblastoma-amplified protein  RGD1559481_predicted  similar to 4933425L03Rik protein (predicted)  Data merged from RGD:1559481 1643240 APPROVED
2006-11-19 LOC690073  similar to neuroblastoma-amplified protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1559481_predicted  similar to 4933425L03Rik protein (predicted)  LOC313967  similar to 4933425L03Rik protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313967  similar to 4933425L03Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL