Pard3b (par-3 family cell polarity regulator beta) - Rat Genome Database

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Gene: Pard3b (par-3 family cell polarity regulator beta) Rattus norvegicus
Analyze
Symbol: Pard3b
Name: par-3 family cell polarity regulator beta
RGD ID: 1584992
Description: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be located in cell junction. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Orthologous to human PARD3B (par-3 family cell polarity regulator beta); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC301455; par-3 partitioning defective 3 homolog B; par-3 partitioning defective 3 homolog B (C. elegans); partitioning defective 3 homolog B; similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8970,532,358 - 71,561,044 (+)NCBIGRCr8
mRatBN7.2963,038,435 - 64,067,178 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl963,038,436 - 64,068,053 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx971,539,470 - 72,550,870 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0976,650,917 - 77,674,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0974,967,233 - 75,984,014 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0968,414,339 - 69,426,226 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl968,414,339 - 69,426,226 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0968,228,908 - 69,236,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4960,249,099 - 61,275,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera960,461,625 - 61,470,971 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16458856  


Genomics

Comparative Map Data
Pard3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8970,532,358 - 71,561,044 (+)NCBIGRCr8
mRatBN7.2963,038,435 - 64,067,178 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl963,038,436 - 64,068,053 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx971,539,470 - 72,550,870 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0976,650,917 - 77,674,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0974,967,233 - 75,984,014 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0968,414,339 - 69,426,226 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl968,414,339 - 69,426,226 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0968,228,908 - 69,236,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4960,249,099 - 61,275,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera960,461,625 - 61,470,971 (+)NCBICelera
Cytogenetic Map9q32NCBI
PARD3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382204,545,475 - 205,620,162 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2204,545,475 - 205,620,162 (+)EnsemblGRCh38hg38GRCh38
GRCh372205,410,198 - 206,484,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362205,118,761 - 206,188,782 (+)NCBINCBI36Build 36hg18NCBI36
Build 342205,236,021 - 206,306,043NCBI
Celera2199,165,594 - 200,238,308 (+)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2197,257,381 - 198,332,869 (+)NCBIHuRef
CHM1_12205,417,249 - 206,491,622 (+)NCBICHM1_1
T2T-CHM13v2.02205,027,774 - 206,102,476 (+)NCBIT2T-CHM13v2.0
Pard3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39161,677,825 - 62,681,443 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl161,677,983 - 62,681,443 (+)EnsemblGRCm39 Ensembl
GRCm38161,638,667 - 62,642,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl161,638,824 - 62,642,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37161,685,398 - 62,688,858 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36161,573,162 - 62,572,199 (+)NCBIMGSCv36mm8
Celera162,153,615 - 63,159,641 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.92NCBI
Pard3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554579,372,267 - 10,232,271 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554579,367,942 - 10,232,855 (-)NCBIChiLan1.0ChiLan1.0
PARD3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213107,146,918 - 108,221,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B107,162,377 - 108,236,842 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B91,774,815 - 92,848,957 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B209,914,990 - 210,979,752 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B210,056,697 - 210,975,405 (+)Ensemblpanpan1.1panPan2
PARD3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13713,251,965 - 14,233,893 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3713,251,881 - 14,230,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3714,134,152 - 15,113,090 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03713,189,579 - 14,171,818 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3713,189,667 - 14,169,018 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13713,145,434 - 14,125,051 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03713,110,067 - 14,097,886 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03713,111,043 - 14,091,924 (+)NCBIUU_Cfam_GSD_1.0
Pard3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303161,443,896 - 162,423,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366311,079,478 - 2,054,258 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366311,079,002 - 2,058,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARD3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15107,882,832 - 108,910,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115107,882,457 - 108,913,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215120,243,187 - 120,501,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PARD3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11090,313,506 - 91,394,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1090,857,460 - 91,389,718 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040107,984,235 - 109,079,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pard3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476510,548,067 - 11,214,095 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476510,543,734 - 11,627,811 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pard3b
3841 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:67
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000040778
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat

Markers in Region
D9Rat117  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,469,569 - 63,469,726 (+)MAPPERmRatBN7.2
Rnor_6.0968,839,966 - 68,840,122NCBIRnor6.0
Rnor_5.0968,653,891 - 68,654,047UniSTSRnor5.0
RGSC_v3.4960,685,216 - 60,685,372UniSTSRGSC3.4
RGSC_v3.4838,948,694 - 38,948,850UniSTSRGSC3.4
RGSC_v3.1960,832,060 - 60,832,457RGD
Celera960,891,901 - 60,892,057UniSTS
SHRSP x BN Map944.3798UniSTS
SHRSP x BN Map944.3798RGD
Cytogenetic Map9q31UniSTS
D9Got67  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,241,399 - 63,241,622 (+)MAPPERmRatBN7.2
Rnor_6.0968,614,236 - 68,614,458NCBIRnor6.0
Rnor_5.0968,428,805 - 68,429,027UniSTSRnor5.0
RGSC_v3.4960,451,498 - 60,451,721RGDRGSC3.4
RGSC_v3.4960,451,499 - 60,451,721UniSTSRGSC3.4
RGSC_v3.1960,598,481 - 60,598,703RGD
Celera960,664,152 - 60,664,374UniSTS
RH 3.4 Map9515.2UniSTS
RH 3.4 Map9515.2RGD
RH 2.0 Map9584.6RGD
Cytogenetic Map9q31UniSTS
D9Got66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,132,261 - 63,132,460 (+)MAPPERmRatBN7.2
Rnor_6.0968,506,846 - 68,507,044NCBIRnor6.0
Rnor_5.0968,321,415 - 68,321,613UniSTSRnor5.0
RGSC_v3.4960,342,360 - 60,342,559RGDRGSC3.4
RGSC_v3.4960,342,361 - 60,342,559UniSTSRGSC3.4
RGSC_v3.1960,489,342 - 60,489,541RGD
Celera960,555,074 - 60,555,272UniSTS
RH 2.0 Map9587.6RGD
Cytogenetic Map9q31UniSTS
RH133643  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,095,976 - 63,096,174 (+)MAPPERmRatBN7.2
Rnor_6.0968,470,561 - 68,470,758NCBIRnor6.0
Rnor_5.0968,285,130 - 68,285,327UniSTSRnor5.0
RGSC_v3.4960,306,076 - 60,306,273UniSTSRGSC3.4
Celera960,518,789 - 60,518,986UniSTS
RH 3.4 Map9515.1UniSTS
Cytogenetic Map9q31UniSTS
RH144246  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,295,202 - 63,295,352 (+)MAPPERmRatBN7.2
Rnor_6.0968,668,043 - 68,668,192NCBIRnor6.0
Rnor_5.0968,482,585 - 68,482,734UniSTSRnor5.0
RGSC_v3.4960,508,371 - 60,508,520UniSTSRGSC3.4
Celera960,718,192 - 60,718,341UniSTS
RH 3.4 Map9515.1UniSTS
Cytogenetic Map9q31UniSTS
BE120687  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,801,673 - 63,801,845 (+)MAPPERmRatBN7.2
Rnor_6.0969,173,469 - 69,173,640NCBIRnor6.0
Rnor_5.0968,984,876 - 68,985,047UniSTSRnor5.0
RGSC_v3.4961,023,609 - 61,023,780UniSTSRGSC3.4
Celera961,221,809 - 61,221,980UniSTS
RH 3.4 Map9518.8UniSTS
Cytogenetic Map9q31UniSTS
AU047327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,333,231 - 63,333,373 (+)MAPPERmRatBN7.2
Rnor_6.0968,706,633 - 68,706,774NCBIRnor6.0
Rnor_5.0968,521,175 - 68,521,316UniSTSRnor5.0
RGSC_v3.4960,546,007 - 60,546,148UniSTSRGSC3.4
Celera960,756,221 - 60,756,364UniSTS
Cytogenetic Map9q31UniSTS
MARC_21133-21134:1025201105:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2963,757,444 - 63,758,385 (+)MAPPERmRatBN7.2
Rnor_6.0969,129,240 - 69,130,180NCBIRnor6.0
Rnor_5.0968,940,647 - 68,941,587UniSTSRnor5.0
RGSC_v3.4960,979,380 - 60,980,320UniSTSRGSC3.4
Celera961,177,581 - 61,178,521UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 10 8 2 8 1 1 22 17 11 1
Low 3 33 47 33 17 33 7 10 74 13 24 7
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000040778   ⟹   ENSRNOP00000039831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl963,038,691 - 64,068,053 (+)Ensembl
Rnor_6.0 Ensembl968,414,339 - 69,426,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093936   ⟹   ENSRNOP00000080352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl963,038,436 - 64,055,445 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100701   ⟹   ENSRNOP00000087764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl963,038,436 - 64,055,445 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101906   ⟹   ENSRNOP00000093250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl963,038,436 - 64,055,445 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104505   ⟹   ENSRNOP00000091023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl963,422,794 - 64,055,445 (+)Ensembl
RefSeq Acc Id: NM_001191808   ⟹   NP_001178737
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8970,532,495 - 71,550,346 (+)NCBI
mRatBN7.2963,038,591 - 64,056,467 (+)NCBI
Rnor_6.0968,414,339 - 69,426,226 (+)NCBI
Rnor_5.0968,228,908 - 69,236,542 (+)NCBI
Celera960,461,625 - 61,470,971 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083322   ⟹   XP_038939250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8970,532,358 - 71,561,044 (+)NCBI
mRatBN7.2963,038,435 - 64,067,178 (+)NCBI
RefSeq Acc Id: XM_063266952   ⟹   XP_063123022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8970,992,262 - 71,550,346 (+)NCBI
RefSeq Acc Id: NP_001178737   ⟸   NM_001191808
- UniProtKB: A0A8I5ZQH3 (UniProtKB/TrEMBL),   A0A8I6A8L0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039831   ⟸   ENSRNOT00000040778
RefSeq Acc Id: XP_038939250   ⟸   XM_039083322
- Peptide Label: isoform X1
- UniProtKB: F1LW22 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091023   ⟸   ENSRNOT00000104505
RefSeq Acc Id: ENSRNOP00000080352   ⟸   ENSRNOT00000093936
RefSeq Acc Id: ENSRNOP00000087764   ⟸   ENSRNOT00000100701
RefSeq Acc Id: ENSRNOP00000093250   ⟸   ENSRNOT00000101906
RefSeq Acc Id: XP_063123022   ⟸   XM_063266952
- Peptide Label: isoform X2
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW22-F1-model_v2 AlphaFold F1LW22 1-1203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584992 AgrOrtholog
BioCyc Gene G2FUF-27361 BioCyc
Ensembl Genes ENSRNOG00000024345 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040778.5 UniProtKB/TrEMBL
  ENSRNOT00000093936 ENTREZGENE
  ENSRNOT00000093936.1 UniProtKB/TrEMBL
  ENSRNOT00000100701.1 UniProtKB/TrEMBL
  ENSRNOT00000101906.1 UniProtKB/TrEMBL
  ENSRNOT00000104505.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro DUF3534 UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report rno:301455 UniProtKB/TrEMBL
NCBI Gene 301455 ENTREZGENE
PANTHER PARTITIONING DEFECTIVE 3 HOMOLOG B UniProtKB/TrEMBL
  PARTITIONING DEFECTIVE 3 RELATED UniProtKB/TrEMBL
Pfam DUF3534 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PhenoGen Pard3b PhenoGen
PROSITE PDZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024345 RatGTEx
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP PDZ UniProtKB/TrEMBL
UniProt A0A8I5ZQH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8L0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIM2_RAT UniProtKB/TrEMBL
  A0A8I6GJB2_RAT UniProtKB/TrEMBL
  F1LW22 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-19 Pard3b  par-3 family cell polarity regulator beta  Pard3b  par-3 partitioning defective 3 homolog B (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Pard3b  par-3 partitioning defective 3 homolog B (C. elegans)  LOC301455  similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC301455  similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b      Symbol and Name status set to provisional 70820 PROVISIONAL