Cluap1-ps2 (clusterin associated protein 1, pseudogene 2) - Rat Genome Database

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Gene: Cluap1-ps2 (clusterin associated protein 1, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Cluap1-ps2
Name: clusterin associated protein 1, pseudogene 2
RGD ID: 1584806
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC679735; similar to clusterin associated protein 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81473,632,897 - 73,634,149 (-)NCBIGRCr8
mRatBN7.21469,420,503 - 69,421,755 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01474,058,779 - 74,059,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01474,064,661 - 74,065,826 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41474,597,876 - 74,599,041 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1468,347,733 - 68,348,898 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Cluap1-ps2
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat

Markers in Region
RH132312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,587,997 - 11,588,207 (+)MAPPERmRatBN7.2
mRatBN7.21469,420,244 - 69,420,457 (+)MAPPERmRatBN7.2
Rnor_6.01474,058,521 - 74,058,733NCBIRnor6.0
Rnor_6.01011,847,082 - 11,847,291NCBIRnor6.0
Rnor_5.01474,064,403 - 74,064,615UniSTSRnor5.0
Rnor_5.01010,601,997 - 10,602,206UniSTSRnor5.0
RGSC_v3.41011,855,549 - 11,855,758UniSTSRGSC3.4
RGSC_v3.41474,597,618 - 74,597,830UniSTSRGSC3.4
Celera1468,347,475 - 68,347,687UniSTS
Celera1010,544,747 - 10,544,956UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map10q12UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_146290
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01474,064,661 - 74,065,882 (-)NCBI
RefSeq Acc Id: XR_146604
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1468,347,733 - 68,348,954 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15466 BioCyc
NCBI Gene 679735 ENTREZGENE
PhenoGen Cluap1-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Cluap1-ps2  clusterin associated protein 1, pseudogene 2  LOC679735  similar to clusterin associated protein 1  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC679735  similar to clusterin associated protein 1  LOC682367  similar to clusterin associated protein 1  Data merged from RGD:1584582 1643240 APPROVED
2006-11-19 LOC679735  similar to clusterin associated protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682367  similar to clusterin associated protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL