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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
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Variants in Hmgb4l2
2 total Variants |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
reproductive system | |
High | |
Medium | 5 |
Low | 2 |
Below cutoff | 1 |
RefSeq Acc Id: | ENSRNOT00000087819 ⟹ ENSRNOP00000069361 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000104674 ⟹ ENSRNOP00000086397 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_006257516 ⟹ XP_006257578 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | XP_006257578 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000086397 | ||
ENSRNOP00000086397.1 | |||
ENSRNOP00000087272.1 |
RefSeq Acc Id: | XP_006257578 ⟸ XM_006257516 |
- UniProtKB: | A0A8I6A255 (UniProtKB/TrEMBL), A0A8I6A6Y4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000069361 ⟸ ENSRNOT00000087819 |
RefSeq Acc Id: | ENSRNOP00000086397 ⟸ ENSRNOT00000104674 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2JV60-F1-model_v2 | AlphaFold | A0A0G2JV60 | 1-168 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1584677 | AgrOrtholog |
BioCyc Gene | G2FUF-1198 | BioCyc |
Ensembl Genes | ENSRNOG00000057013 | Ensembl |
ENSRNOG00000063745 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL | |
ENSRNOG00000067113 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000103726.1 | UniProtKB/TrEMBL |
ENSRNOT00000104674.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.30.10 | UniProtKB/TrEMBL |
InterPro | HMG_box_dom | UniProtKB/TrEMBL |
HMG_box_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:681067 | UniProtKB/TrEMBL |
NCBI Gene | 681067 | ENTREZGENE |
PANTHER | HIGH MOBILITY GROUP PROTEIN B4 | UniProtKB/TrEMBL |
HIGH MOBILITY GROUP PROTEIN DSP1 | UniProtKB/TrEMBL | |
Pfam | HMG_box | UniProtKB/TrEMBL |
HMG_box_2 | UniProtKB/TrEMBL | |
PhenoGen | Hmgb4l2 | PhenoGen |
PRINTS | HIGHMOBLTY12 | UniProtKB/TrEMBL |
PROSITE | HMG_BOX_2 | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000057013 | RatGTEx |
ENSRNOG00000063745 | RatGTEx | |
ENSRNOG00000067113 | RatGTEx | |
SMART | HMG | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF47095 | UniProtKB/TrEMBL |
UniProt | A0A8I6A255 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6A6Y4 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2023-09-19 | Hmgb4l2 | high-mobility group box 4 like 2 | LOC681067 | similar to RIKEN cDNA 1700001F22 | Symbol and Name Changed | 1299863 | APPROVED |
2008-01-09 | LOC681067 | similar to RIKEN cDNA 1700001F22 | LOC683784 | similar to RIKEN cDNA 1700001F22 | Data merged from RGD:1583311 | 1643240 | APPROVED |
2006-11-19 | LOC681067 | similar to RIKEN cDNA 1700001F22 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2006-11-19 | LOC683784 | similar to RIKEN cDNA 1700001F22 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |